4GLV
OBody AM3L09 bound to hen egg-white lysozyme
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003796 | molecular_function | lysozyme activity |
A | 0003824 | molecular_function | catalytic activity |
A | 0005515 | molecular_function | protein binding |
A | 0005576 | cellular_component | extracellular region |
A | 0005615 | cellular_component | extracellular space |
A | 0005737 | cellular_component | cytoplasm |
A | 0005783 | cellular_component | endoplasmic reticulum |
A | 0008152 | biological_process | metabolic process |
A | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0016998 | biological_process | cell wall macromolecule catabolic process |
A | 0031640 | biological_process | killing of cells of another organism |
A | 0042742 | biological_process | defense response to bacterium |
A | 0042802 | molecular_function | identical protein binding |
A | 0050829 | biological_process | defense response to Gram-negative bacterium |
A | 0050830 | biological_process | defense response to Gram-positive bacterium |
A | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
B | 0003676 | molecular_function | nucleic acid binding |
C | 0003796 | molecular_function | lysozyme activity |
C | 0003824 | molecular_function | catalytic activity |
C | 0005515 | molecular_function | protein binding |
C | 0005576 | cellular_component | extracellular region |
C | 0005615 | cellular_component | extracellular space |
C | 0005737 | cellular_component | cytoplasm |
C | 0005783 | cellular_component | endoplasmic reticulum |
C | 0008152 | biological_process | metabolic process |
C | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
C | 0016998 | biological_process | cell wall macromolecule catabolic process |
C | 0031640 | biological_process | killing of cells of another organism |
C | 0042742 | biological_process | defense response to bacterium |
C | 0042802 | molecular_function | identical protein binding |
C | 0050829 | biological_process | defense response to Gram-negative bacterium |
C | 0050830 | biological_process | defense response to Gram-positive bacterium |
C | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
D | 0003676 | molecular_function | nucleic acid binding |
E | 0003796 | molecular_function | lysozyme activity |
E | 0003824 | molecular_function | catalytic activity |
E | 0005515 | molecular_function | protein binding |
E | 0005576 | cellular_component | extracellular region |
E | 0005615 | cellular_component | extracellular space |
E | 0005737 | cellular_component | cytoplasm |
E | 0005783 | cellular_component | endoplasmic reticulum |
E | 0008152 | biological_process | metabolic process |
E | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
E | 0016998 | biological_process | cell wall macromolecule catabolic process |
E | 0031640 | biological_process | killing of cells of another organism |
E | 0042742 | biological_process | defense response to bacterium |
E | 0042802 | molecular_function | identical protein binding |
E | 0050829 | biological_process | defense response to Gram-negative bacterium |
E | 0050830 | biological_process | defense response to Gram-positive bacterium |
E | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
F | 0003676 | molecular_function | nucleic acid binding |
G | 0003796 | molecular_function | lysozyme activity |
G | 0003824 | molecular_function | catalytic activity |
G | 0005515 | molecular_function | protein binding |
G | 0005576 | cellular_component | extracellular region |
G | 0005615 | cellular_component | extracellular space |
G | 0005737 | cellular_component | cytoplasm |
G | 0005783 | cellular_component | endoplasmic reticulum |
G | 0008152 | biological_process | metabolic process |
G | 0016231 | molecular_function | beta-N-acetylglucosaminidase activity |
G | 0016787 | molecular_function | hydrolase activity |
G | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
G | 0016998 | biological_process | cell wall macromolecule catabolic process |
G | 0031640 | biological_process | killing of cells of another organism |
G | 0042742 | biological_process | defense response to bacterium |
G | 0042802 | molecular_function | identical protein binding |
G | 0050829 | biological_process | defense response to Gram-negative bacterium |
G | 0050830 | biological_process | defense response to Gram-positive bacterium |
G | 0051672 | biological_process | obsolete catabolism by organism of cell wall peptidoglycan in other organism |
H | 0003676 | molecular_function | nucleic acid binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PO4 A 201 |
Chain | Residue |
A | GLY4 |
A | ARG5 |
A | CYS6 |
A | GLU7 |
G | ARG14 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PO4 A 202 |
Chain | Residue |
A | ILE88 |
A | ALA11 |
A | ARG14 |
A | HIS15 |
A | ASP87 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 203 |
Chain | Residue |
A | ASP48 |
A | ARG61 |
A | HOH330 |
B | LYS37 |
B | PHE64 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 201 |
Chain | Residue |
B | HOH303 |
B | HOH323 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL B 202 |
Chain | Residue |
B | ARG44 |
B | HOH307 |
G | GLU35 |
G | ASN44 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL C 201 |
Chain | Residue |
C | ARG21 |
C | GLY22 |
C | TYR23 |
C | HOH325 |
D | TRP90 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL C 202 |
Chain | Residue |
C | PHE34 |
F | ASP43 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 203 |
Chain | Residue |
C | SER36 |
C | ASN39 |
C | ASN44 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 204 |
Chain | Residue |
C | ARG21 |
C | ASN93 |
C | LYS97 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 205 |
Chain | Residue |
C | PHE3 |
C | ARG14 |
C | HIS15 |
C | SER86 |
C | ASP87 |
C | ILE88 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EPE C 206 |
Chain | Residue |
C | ASN19 |
C | TYR20 |
C | ARG21 |
C | GLY22 |
D | ARG89 |
site_id | BC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL D 201 |
Chain | Residue |
D | SER42 |
D | GLU45 |
D | GLY46 |
D | GLY47 |
E | ASN113 |
F | GLU55 |
F | ARG56 |
site_id | BC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL E 201 |
Chain | Residue |
E | ALA122 |
E | TRP123 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL E 202 |
Chain | Residue |
E | TYR20 |
E | ARG21 |
E | HOH338 |
F | PO4201 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 E 203 |
Chain | Residue |
E | ARG14 |
E | HIS15 |
E | ASP87 |
E | ILE88 |
E | HOH337 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PO4 F 201 |
Chain | Residue |
D | HIS62 |
E | ARG21 |
E | GOL202 |
F | ARG89 |
F | TRP90 |
site_id | BC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL F 202 |
Chain | Residue |
F | TRP26 |
F | GLU45 |
F | GLU73 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL F 203 |
Chain | Residue |
F | LYS58 |
F | PRO60 |
F | PHE97 |
F | PRO98 |
F | SER99 |
site_id | CC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL F 204 |
Chain | Residue |
F | SER71 |
F | ARG72 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL F 205 |
Chain | Residue |
F | ILE103 |
F | LEU104 |
F | ASN105 |
F | LYS106 |
H | ILE103 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL F 206 |
Chain | Residue |
A | ASN65 |
A | PRO79 |
F | THR85 |
F | THR86 |
F | HOH333 |
site_id | CC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PO4 G 201 |
Chain | Residue |
B | HIS62 |
G | ARG21 |
H | ARG89 |
H | TRP90 |
site_id | CC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE GOL G 202 |
Chain | Residue |
G | TRP123 |
site_id | CC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PO4 H 201 |
Chain | Residue |
C | ASN65 |
G | LYS116 |
G | GLY117 |
H | THR86 |
H | HOH333 |
site_id | CC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL H 202 |
Chain | Residue |
H | TRP8 |
H | GLU11 |
H | LYS5 |
site_id | CC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL H 203 |
Chain | Residue |
B | ASP61 |
H | THR88 |
H | ARG89 |
site_id | CC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL H 204 |
Chain | Residue |
A | ARG114 |
H | GLU45 |
Functional Information from PROSITE/UniProt
site_id | PS00128 |
Number of Residues | 19 |
Details | GLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC |
Chain | Residue | Details |
A | CYS76-CYS94 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | ACT_SITE: |
Chain | Residue | Details |
A | GLU35 | |
A | ASP52 | |
C | GLU35 | |
C | ASP52 | |
E | GLU35 | |
E | ASP52 | |
G | GLU35 | |
G | ASP52 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: |
Chain | Residue | Details |
A | ASP101 | |
C | ASP101 | |
E | ASP101 | |
G | ASP101 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 203 |
Chain | Residue | Details |
A | GLU35 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | ASN46 | |
A | ASP48 | |
A | SER50 | |
A | ASP52 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
A | ASN59 |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 203 |
Chain | Residue | Details |
C | GLU35 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
C | ASN46 | |
C | ASP48 | |
C | SER50 | |
C | ASP52 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
C | ASN59 |
site_id | MCSA3 |
Number of Residues | 6 |
Details | M-CSA 203 |
Chain | Residue | Details |
E | GLU35 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
E | ASN46 | |
E | ASP48 | |
E | SER50 | |
E | ASP52 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
E | ASN59 |
site_id | MCSA4 |
Number of Residues | 6 |
Details | M-CSA 203 |
Chain | Residue | Details |
G | GLU35 | hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
G | ASN46 | |
G | ASP48 | |
G | SER50 | |
G | ASP52 | covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction |
G | ASN59 |