4GIL
Crystal Structure of Pseudouridine Monophosphate Glycosidase/Linear Pseudouridine 5'-Phosphate Adduct
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0001522 | biological_process | pseudouridine synthesis |
A | 0004730 | molecular_function | pseudouridylate synthase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0016829 | molecular_function | lyase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0032991 | cellular_component | protein-containing complex |
A | 0042802 | molecular_function | identical protein binding |
A | 0046113 | biological_process | nucleobase catabolic process |
A | 0046872 | molecular_function | metal ion binding |
B | 0001522 | biological_process | pseudouridine synthesis |
B | 0004730 | molecular_function | pseudouridylate synthase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0016829 | molecular_function | lyase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0032991 | cellular_component | protein-containing complex |
B | 0042802 | molecular_function | identical protein binding |
B | 0046113 | biological_process | nucleobase catabolic process |
B | 0046872 | molecular_function | metal ion binding |
C | 0001522 | biological_process | pseudouridine synthesis |
C | 0004730 | molecular_function | pseudouridylate synthase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
C | 0016829 | molecular_function | lyase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0032991 | cellular_component | protein-containing complex |
C | 0042802 | molecular_function | identical protein binding |
C | 0046113 | biological_process | nucleobase catabolic process |
C | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN A 400 |
Chain | Residue |
A | ASP145 |
A | HOH502 |
A | HOH570 |
A | HOH600 |
C | HOH502 |
C | HOH538 |
site_id | AC2 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE KPS A 401 |
Chain | Residue |
A | GLY38 |
A | LYS93 |
A | THR112 |
A | VAL113 |
A | THR130 |
A | GLY131 |
A | GLY132 |
A | SER147 |
A | ASP149 |
A | LYS166 |
A | PHE196 |
A | THR270 |
A | LEU274 |
A | ASN289 |
A | HOH508 |
A | HOH511 |
A | HOH514 |
A | HOH530 |
A | HOH600 |
A | GLU31 |
A | THR33 |
A | ILE34 |
site_id | AC3 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE KPS B 401 |
Chain | Residue |
B | GLU31 |
B | THR33 |
B | LYS93 |
B | THR112 |
B | VAL113 |
B | THR130 |
B | GLY131 |
B | GLY132 |
B | SER147 |
B | ASP149 |
B | LYS166 |
B | THR270 |
B | ASN289 |
B | HOH502 |
B | HOH512 |
B | HOH519 |
B | HOH531 |
B | HOH548 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MN B 402 |
Chain | Residue |
A | HOH503 |
A | HOH571 |
A | HOH589 |
B | ASP145 |
B | HOH513 |
B | HOH548 |
site_id | AC5 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE KPS C 401 |
Chain | Residue |
C | GLU31 |
C | THR33 |
C | LYS93 |
C | THR112 |
C | VAL113 |
C | THR130 |
C | GLY131 |
C | GLY132 |
C | SER147 |
C | ASP149 |
C | LYS166 |
C | THR270 |
C | LEU274 |
C | ASN289 |
C | HOH501 |
C | HOH518 |
C | HOH524 |
C | HOH539 |
C | HOH540 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MN C 402 |
Chain | Residue |
B | GLU179 |
B | HOH501 |
B | HOH515 |
C | ASP145 |
C | HOH501 |
C | HOH541 |
C | HOH542 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01876, ECO:0000303|PubMed:23066817 |
Chain | Residue | Details |
A | GLU31 | |
B | GLU31 | |
C | GLU31 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | ACT_SITE: Nucleophile => ECO:0000255|HAMAP-Rule:MF_01876, ECO:0000303|PubMed:23066817 |
Chain | Residue | Details |
A | LYS166 | |
B | LYS166 | |
C | LYS166 |
site_id | SWS_FT_FI3 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01876, ECO:0000269|PubMed:23066817 |
Chain | Residue | Details |
A | LYS93 | |
C | VAL113 | |
C | ASP145 | |
C | SER147 | |
A | VAL113 | |
A | ASP145 | |
A | SER147 | |
B | LYS93 | |
B | VAL113 | |
B | ASP145 | |
B | SER147 | |
C | LYS93 |