4GIK
Crystal Structure of Pseudouridine Monophosphate Glycosidase/Linear R5P Adduct
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0001522 | biological_process | pseudouridine synthesis |
| A | 0004730 | molecular_function | pseudouridylate synthase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0016829 | molecular_function | lyase activity |
| A | 0030145 | molecular_function | manganese ion binding |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046113 | biological_process | nucleobase catabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0001522 | biological_process | pseudouridine synthesis |
| B | 0004730 | molecular_function | pseudouridylate synthase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| B | 0016829 | molecular_function | lyase activity |
| B | 0030145 | molecular_function | manganese ion binding |
| B | 0032991 | cellular_component | protein-containing complex |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046113 | biological_process | nucleobase catabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0001522 | biological_process | pseudouridine synthesis |
| C | 0004730 | molecular_function | pseudouridylate synthase activity |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| C | 0016829 | molecular_function | lyase activity |
| C | 0030145 | molecular_function | manganese ion binding |
| C | 0032991 | cellular_component | protein-containing complex |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0046113 | biological_process | nucleobase catabolic process |
| C | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE R5P A 401 |
| Chain | Residue |
| A | GLU31 |
| A | THR270 |
| A | HOH511 |
| A | HOH515 |
| A | HOH529 |
| A | HOH535 |
| A | HOH621 |
| A | HOH623 |
| A | HOH627 |
| A | HOH645 |
| A | THR33 |
| A | LYS93 |
| A | THR112 |
| A | VAL113 |
| A | GLY132 |
| A | SER147 |
| A | ASP149 |
| A | LYS166 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN A 402 |
| Chain | Residue |
| A | ASP145 |
| A | HOH620 |
| A | HOH622 |
| A | HOH623 |
| A | HOH645 |
| C | HOH553 |
| site_id | AC3 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE R5P B 401 |
| Chain | Residue |
| B | GLU31 |
| B | LYS93 |
| B | THR112 |
| B | VAL113 |
| B | GLY132 |
| B | SER147 |
| B | ASP149 |
| B | LYS166 |
| B | THR270 |
| B | HOH503 |
| B | HOH508 |
| B | HOH526 |
| B | HOH534 |
| B | HOH550 |
| B | HOH600 |
| B | HOH601 |
| B | HOH618 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN B 402 |
| Chain | Residue |
| A | HOH624 |
| A | HOH625 |
| B | ASP145 |
| B | HOH599 |
| B | HOH601 |
| B | HOH618 |
| site_id | AC5 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE R5P C 401 |
| Chain | Residue |
| C | GLU31 |
| C | THR33 |
| C | LYS93 |
| C | VAL113 |
| C | GLY132 |
| C | SER147 |
| C | ASP149 |
| C | LYS166 |
| C | THR270 |
| C | HOH505 |
| C | HOH512 |
| C | HOH536 |
| C | HOH539 |
| C | HOH550 |
| C | HOH552 |
| C | HOH556 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MN C 402 |
| Chain | Residue |
| B | HOH598 |
| C | ASP145 |
| C | HOH549 |
| C | HOH550 |
| C | HOH551 |
| C | HOH552 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 3 |
| Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01876, ECO:0000303|PubMed:23066817 |
| Chain | Residue | Details |
| A | GLU31 | |
| B | GLU31 | |
| C | GLU31 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 3 |
| Details | ACT_SITE: Nucleophile => ECO:0000255|HAMAP-Rule:MF_01876, ECO:0000303|PubMed:23066817 |
| Chain | Residue | Details |
| A | LYS166 | |
| B | LYS166 | |
| C | LYS166 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 12 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01876, ECO:0000269|PubMed:23066817 |
| Chain | Residue | Details |
| A | LYS93 | |
| C | VAL113 | |
| C | ASP145 | |
| C | SER147 | |
| A | VAL113 | |
| A | ASP145 | |
| A | SER147 | |
| B | LYS93 | |
| B | VAL113 | |
| B | ASP145 | |
| B | SER147 | |
| C | LYS93 |
