4GIK
Crystal Structure of Pseudouridine Monophosphate Glycosidase/Linear R5P Adduct
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-02-08 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 61.347, 116.496, 132.153 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.204 - 2.187 |
R-factor | 0.1819 |
Rwork | 0.179 |
R-free | 0.23130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vkm |
RMSD bond length | 0.007 |
RMSD bond angle | 1.178 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.7.1_743) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.280 |
High resolution limit [Å] | 2.187 | 4.740 | 2.187 |
Rmerge | 0.082 | 0.030 | 0.470 |
Number of reflections | 49152 | ||
<I/σ(I)> | 7.4 | ||
Completeness [%] | 99.8 | 98.9 | 99.9 |
Redundancy | 4 | 3.8 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 295 | 22% PEG4000, 0.1 M Tris, 0.2 M sodium chloride, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K |