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4G0D

Human collagenase 3 (MMP-13) full form with peptides from pro-domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
C0004222molecular_functionmetalloendopeptidase activity
C0006508biological_processproteolysis
C0008237molecular_functionmetallopeptidase activity
C0008270molecular_functionzinc ion binding
C0031012cellular_componentextracellular matrix
D0004222molecular_functionmetalloendopeptidase activity
D0006508biological_processproteolysis
D0008237molecular_functionmetallopeptidase activity
D0008270molecular_functionzinc ion binding
D0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS222
AHIS226
AHIS232
WSER45
WHOH101

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHIS172
AASP174
AHIS187
AHIS200

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 503
ChainResidue
AASP128
AASP203
AGLU205

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 504
ChainResidue
AASP179
AGLY180
ASER182
ALEU184
AASP202
AGLU205

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 505
ChainResidue
AASP162
AASN194
AGLY196
AASP198
AHOH750

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 506
ChainResidue
AASP291
AASP335
ASER383
AASP432
AHOH625
AHOH680
AHOH820

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 507
ChainResidue
AILE293
AALA337
AALA385
AVAL434
ACL508
AHOH746

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 508
ChainResidue
AILE293
AALA337
AALA385
AVAL434
ACA507

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 509
ChainResidue
AASP390
AHOH819

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 510
ChainResidue
AASP390
ATHR391
ATHR408

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 511
ChainResidue
ALYS170
CTRP455

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 512
ChainResidue
ATYR440
ASER453
ATRP455
ASER456
AVAL460

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO A 513
ChainResidue
AMET253
AARG306
APGO514
AHOH817

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGO A 514
ChainResidue
AGLY237
ATHR247
APHE252
APRO255
AARG306
ALEU322
APGO513
AHOH673
AHOH717

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 515
ChainResidue
AGLY439
ATRP455

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 516
ChainResidue
ASER467
AHOH691

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO A 517
ChainResidue
APRO281
AASP282
ALEU288
AHOH757

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 518
ChainResidue
AASN215
ATYR246
AGLY248
ALYS249
ASER250

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 519
ChainResidue
AGLN401
APRO417

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PEG A 520
ChainResidue
ATYR104

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 501
ChainResidue
BHIS222
BHIS226
BHIS232
XSER45
XHOH107

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 502
ChainResidue
BHIS172
BASP174
BHIS187
BHIS200

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 503
ChainResidue
BASP128
BASP203
BGLU205
BHOH653

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 504
ChainResidue
BASP202
BGLU205
BASP179
BGLY180
BSER182
BLEU184

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 505
ChainResidue
BASP162
BASN194
BGLY196
BASP198
BHOH643
BHOH720

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 506
ChainResidue
BASP291
BASP335
BSER383
BASP432
BHOH605
BHOH675
BHOH801

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 507
ChainResidue
BILE293
BALA337
BALA385
BVAL434
BCL508
BCL510

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 508
ChainResidue
BILE293
BALA337
BALA385
BVAL434
BCA507

site_idDC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 509
ChainResidue
BSER146
BTHR149
BGLY269
BHOH711

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 510
ChainResidue
BILE293
BTHR294
BTYR338
BCA507
BHOH641
BHOH736

site_idDC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG B 511
ChainResidue
BVAL106
BPHE107
BARG109

site_idDC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 512
ChainResidue
BPRO278
BHOH633

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG B 513
ChainResidue
BTYR125
BTHR126
BPHE167
BILE169
BASP203
BHOH670

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG B 514
ChainResidue
BASN124
BTYR125
BHIS131
CTRP455

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 515
ChainResidue
BGLU421
BPHE424
BGLY426
BGLY428

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 516
ChainResidue
BLYS283
BCYS284
BLEU469
BTRP470

site_idEC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO B 517
ChainResidue
BLYS140
BPHE217
BTYR246
BGLY248
BLYS249
BSER250
BHOH743

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PGO B 518
ChainResidue
BHIS232

site_idEC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO B 519
ChainResidue
BASN445
BILE448

site_idEC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PGO B 520
ChainResidue
BGLN314

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 501
ChainResidue
CHIS222
CHIS226
CHIS232
YSER45
YCL101

site_idEC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 502
ChainResidue
CHIS172
CASP174
CHIS187
CHIS200

site_idEC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA C 503
ChainResidue
CASP128
CASP203
CGLU205

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA C 504
ChainResidue
CASP179
CGLY180
CSER182
CLEU184
CASP202
CGLU205

site_idEC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA C 505
ChainResidue
CASP162
CASN194
CGLY196
CASP198
CHOH630
CHOH768

site_idFC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA C 506
ChainResidue
CASP291
CASP335
CSER383
CASP432
CHOH621
CHOH656
CHOH709

site_idFC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA C 507
ChainResidue
CILE293
CALA337
CALA385
CVAL434
CCL508

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL C 508
ChainResidue
CALA292
CILE293
CALA337
CALA385
CCA507

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 509
ChainResidue
CSER146
CTHR149
CHOH659
CHOH660

site_idFC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 510
ChainResidue
CILE243
CTHR245
CHOH611
CHOH634

site_idFC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO C 511
ChainResidue
CMET253
CPRO278
CARG306
CARG333
CPGO519
CHOH636

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 512
ChainResidue
AGLU319
AHOH643
CASP317
CALA318

site_idFC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL C 513
ChainResidue
CGLU171

site_idFC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO C 514
ChainResidue
CTHR300
CLEU311
CHIS312
CPRO313
CGLN315
CTRP470
CPGO515

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO C 515
ChainResidue
CSER467
CILE468
CPGO514

site_idGC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO C 516
ChainResidue
AGLN314
CSER325
CTYR360
CHOH692
CHOH722
CHOH782

site_idGC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO C 517
ChainResidue
CASN194
CASP198

site_idGC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO C 518
ChainResidue
BPRO127
CTRP455

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO C 519
ChainResidue
CPHE252
CMET253
CARG306
CPGO511
CPGO520

site_idGC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO C 520
ChainResidue
CTHR247
CPHE252
CPRO255
CARG306
CLEU322
CPGO519
CHOH776

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO C 521
ChainResidue
CASP282
CASP285
CLEU288
CHOH637

site_idGC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 522
ChainResidue
CPRO417
CLEU419

site_idGC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO C 523
ChainResidue
CGLN263
CLEU265

site_idHC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO C 524
ChainResidue
CLYS140
CTHR247
CGLY248
CSER250
CHOH740

site_idHC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 501
ChainResidue
DHIS222
DHIS226
DHIS232
ZSER45
ZCL101

site_idHC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 502
ChainResidue
DHIS172
DASP174
DHIS187
DHIS200

site_idHC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 503
ChainResidue
DASP179
DGLY180
DSER182
DLEU184
DASP202
DGLU205

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA D 504
ChainResidue
DASP128
DASP203
DGLU205
DHOH720

site_idHC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 505
ChainResidue
DASP162
DASN194
DGLY196
DASP198
DHOH684
DHOH781

site_idHC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA D 506
ChainResidue
DASP291
DASP335
DSER383
DASP432
DHOH621
DHOH632
DHOH718

site_idHC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 507
ChainResidue
DILE293
DALA337
DALA385
DVAL434
DCL508
DCL509

site_idHC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL D 508
ChainResidue
DTHR294
DCA507
DHOH676

site_idIC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL D 509
ChainResidue
DILE293
DALA337
DALA385
DALA433
DVAL434
DCA507

site_idIC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO D 510
ChainResidue
DSER146
DTHR149
DPRO150
DLEU151
DASP270

site_idIC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 511
ChainResidue
DPHE252
DMET253
DARG306
DASN332

site_idIC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO D 512
ChainResidue
DASN194
DASP198

site_idIC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 513
ChainResidue
DARG297
DPHE326
DGLY359
DTYR360

site_idIC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 514
ChainResidue
DASP256
DPRO275
DHIS277
DHOH686

site_idIC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO D 515
ChainResidue
CILE459
DGLU421
DGLY426
DILE427
DGLY428
DHOH640

site_idIC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO D 516
ChainResidue
DASP285
DSER287
DLEU288
DSER289
DLYS304
DHOH780

site_idIC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 517
ChainResidue
CPRO464
CHOH775
DASN445
DILE448

site_idJC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 518
ChainResidue
DTYR435
DLYS437
DGLN449
DILE468

site_idJC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO D 519
ChainResidue
DLYS140
DASN215
DTYR246
DGLY248
DLYS249

site_idJC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO D 520
ChainResidue
DTHR110
DLYS112
DPRO191
DGLY192
DHOH736

site_idJC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL Y 101
ChainResidue
CHIS222
CHIS226
CZN501
CHOH715
YARG44
YSER45
YTYR46

site_idJC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL Z 101
ChainResidue
DHIS222
DHIS226
DZN501
DHOH714
ZARG44
ZSER45
ZTYR46

Functional Information from PROSITE/UniProt
site_idPS00024
Number of Residues16
DetailsHEMOPEXIN Hemopexin domain signature. TKsfWpelPnRIDAAY
ChainResidueDetails
ATHR323-TYR338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000305|PubMed:23913860
ChainResidueDetails
AALA223
BALA223
CALA223
DALA223

site_idSWS_FT_FI2
Number of Residues80
DetailsBINDING: BINDING => ECO:0000269|PubMed:10926524, ECO:0000269|PubMed:10986126, ECO:0000269|PubMed:15734645, ECO:0000269|PubMed:15780611, ECO:0000269|PubMed:17196980, ECO:0000269|PubMed:17623656, ECO:0000269|PubMed:19422229, ECO:0000269|PubMed:20005097, ECO:0000269|PubMed:20726512, ECO:0000269|PubMed:22689580, ECO:0000269|PubMed:23810497, ECO:0000269|PubMed:23913860, ECO:0000269|PubMed:8969305
ChainResidueDetails
AASP128
AASP202
AASP203
AGLU205
AASP291
AILE293
AASP335
AALA337
ASER383
AALA385
AASP432
AASP162
AVAL434
BASP128
BASP162
BASP179
BGLY180
BSER182
BLEU184
BASN194
BGLY196
BASP198
AASP179
BASP202
BASP203
BGLU205
BASP291
BILE293
BASP335
BALA337
BSER383
BALA385
BASP432
AGLY180
BVAL434
CASP128
CASP162
CASP179
CGLY180
CSER182
CLEU184
CASN194
CGLY196
CASP198
ASER182
CASP202
CASP203
CGLU205
CASP291
CILE293
CASP335
CALA337
CSER383
CALA385
CASP432
ALEU184
CVAL434
DASP128
DASP162
DASP179
DGLY180
DSER182
DLEU184
DASN194
DGLY196
DASP198
AASN194
DASP202
DASP203
DGLU205
DASP291
DILE293
DASP335
DALA337
DSER383
DALA385
DASP432
AGLY196
DVAL434
AASP198

site_idSWS_FT_FI3
Number of Residues32
DetailsBINDING: BINDING => ECO:0000269|PubMed:10926524, ECO:0000269|PubMed:10986126, ECO:0000269|PubMed:15734645, ECO:0000269|PubMed:15780611, ECO:0000269|PubMed:17196980, ECO:0000269|PubMed:17623656, ECO:0000269|PubMed:19422229, ECO:0000269|PubMed:20005097, ECO:0000269|PubMed:20726512, ECO:0000269|PubMed:22689580, ECO:0000269|PubMed:23810497, ECO:0000269|PubMed:23913860
ChainResidueDetails
AHIS172
BASP174
BHIS187
BHIS200
BHIS222
BHIS226
BHIS232
BMET240
CHIS172
CASP174
CHIS187
AASP174
CHIS200
CHIS222
CHIS226
CHIS232
CMET240
DHIS172
DASP174
DHIS187
DHIS200
DHIS222
AHIS187
DHIS226
DHIS232
DMET240
AHIS200
AHIS222
AHIS226
AHIS232
AMET240
BHIS172

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphotyrosine; by PKDCC => ECO:0000303|PubMed:25171405
ChainResidueDetails
ATYR366
BTYR366
CTYR366
DTYR366

site_idSWS_FT_FI5
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:8576151
ChainResidueDetails
AASN117
BASN117
CASN117
DASN117

site_idSWS_FT_FI6
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN152
BASN152
CASN152
DASN152

237735

PDB entries from 2025-06-18

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