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4G0D

Human collagenase 3 (MMP-13) full form with peptides from pro-domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
C0004222molecular_functionmetalloendopeptidase activity
C0006508biological_processproteolysis
C0008237molecular_functionmetallopeptidase activity
C0008270molecular_functionzinc ion binding
C0031012cellular_componentextracellular matrix
D0004222molecular_functionmetalloendopeptidase activity
D0006508biological_processproteolysis
D0008237molecular_functionmetallopeptidase activity
D0008270molecular_functionzinc ion binding
D0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS222
AHIS226
AHIS232
WSER45
WHOH101

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHIS172
AASP174
AHIS187
AHIS200

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 503
ChainResidue
AASP128
AASP203
AGLU205

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 504
ChainResidue
AASP179
AGLY180
ASER182
ALEU184
AASP202
AGLU205

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 505
ChainResidue
AASP162
AASN194
AGLY196
AASP198
AHOH750

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 506
ChainResidue
AASP291
AASP335
ASER383
AASP432
AHOH625
AHOH680
AHOH820

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 507
ChainResidue
AILE293
AALA337
AALA385
AVAL434
ACL508
AHOH746

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 508
ChainResidue
AILE293
AALA337
AALA385
AVAL434
ACA507

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 509
ChainResidue
AASP390
AHOH819

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 510
ChainResidue
AASP390
ATHR391
ATHR408

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 511
ChainResidue
ALYS170
CTRP455

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 512
ChainResidue
ATYR440
ASER453
ATRP455
ASER456
AVAL460

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO A 513
ChainResidue
AMET253
AARG306
APGO514
AHOH817

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGO A 514
ChainResidue
AGLY237
ATHR247
APHE252
APRO255
AARG306
ALEU322
APGO513
AHOH673
AHOH717

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 515
ChainResidue
AGLY439
ATRP455

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 516
ChainResidue
ASER467
AHOH691

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO A 517
ChainResidue
APRO281
AASP282
ALEU288
AHOH757

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 518
ChainResidue
AASN215
ATYR246
AGLY248
ALYS249
ASER250

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 519
ChainResidue
AGLN401
APRO417

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PEG A 520
ChainResidue
ATYR104

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 501
ChainResidue
BHIS222
BHIS226
BHIS232
XSER45
XHOH107

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 502
ChainResidue
BHIS172
BASP174
BHIS187
BHIS200

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 503
ChainResidue
BASP128
BASP203
BGLU205
BHOH653

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 504
ChainResidue
BASP202
BGLU205
BASP179
BGLY180
BSER182
BLEU184

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 505
ChainResidue
BASP162
BASN194
BGLY196
BASP198
BHOH643
BHOH720

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 506
ChainResidue
BASP291
BASP335
BSER383
BASP432
BHOH605
BHOH675
BHOH801

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 507
ChainResidue
BILE293
BALA337
BALA385
BVAL434
BCL508
BCL510

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 508
ChainResidue
BILE293
BALA337
BALA385
BVAL434
BCA507

site_idDC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 509
ChainResidue
BSER146
BTHR149
BGLY269
BHOH711

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 510
ChainResidue
BILE293
BTHR294
BTYR338
BCA507
BHOH641
BHOH736

site_idDC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PEG B 511
ChainResidue
BVAL106
BPHE107
BARG109

site_idDC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 512
ChainResidue
BPRO278
BHOH633

site_idDC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG B 513
ChainResidue
BTYR125
BTHR126
BPHE167
BILE169
BASP203
BHOH670

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG B 514
ChainResidue
BASN124
BTYR125
BHIS131
CTRP455

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 515
ChainResidue
BGLU421
BPHE424
BGLY426
BGLY428

site_idDC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 516
ChainResidue
BLYS283
BCYS284
BLEU469
BTRP470

site_idEC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO B 517
ChainResidue
BLYS140
BPHE217
BTYR246
BGLY248
BLYS249
BSER250
BHOH743

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PGO B 518
ChainResidue
BHIS232

site_idEC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO B 519
ChainResidue
BASN445
BILE448

site_idEC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PGO B 520
ChainResidue
BGLN314

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 501
ChainResidue
CHIS222
CHIS226
CHIS232
YSER45
YCL101

site_idEC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 502
ChainResidue
CHIS172
CASP174
CHIS187
CHIS200

site_idEC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA C 503
ChainResidue
CASP128
CASP203
CGLU205

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA C 504
ChainResidue
CASP179
CGLY180
CSER182
CLEU184
CASP202
CGLU205

site_idEC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA C 505
ChainResidue
CASP162
CASN194
CGLY196
CASP198
CHOH630
CHOH768

site_idFC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA C 506
ChainResidue
CASP291
CASP335
CSER383
CASP432
CHOH621
CHOH656
CHOH709

site_idFC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA C 507
ChainResidue
CILE293
CALA337
CALA385
CVAL434
CCL508

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL C 508
ChainResidue
CALA292
CILE293
CALA337
CALA385
CCA507

site_idFC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 509
ChainResidue
CSER146
CTHR149
CHOH659
CHOH660

site_idFC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 510
ChainResidue
CILE243
CTHR245
CHOH611
CHOH634

site_idFC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO C 511
ChainResidue
CMET253
CPRO278
CARG306
CARG333
CPGO519
CHOH636

site_idFC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 512
ChainResidue
AGLU319
AHOH643
CASP317
CALA318

site_idFC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL C 513
ChainResidue
CGLU171

site_idFC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO C 514
ChainResidue
CTHR300
CLEU311
CHIS312
CPRO313
CGLN315
CTRP470
CPGO515

site_idGC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO C 515
ChainResidue
CSER467
CILE468
CPGO514

site_idGC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO C 516
ChainResidue
AGLN314
CSER325
CTYR360
CHOH692
CHOH722
CHOH782

site_idGC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO C 517
ChainResidue
CASN194
CASP198

site_idGC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO C 518
ChainResidue
BPRO127
CTRP455

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO C 519
ChainResidue
CPHE252
CMET253
CARG306
CPGO511
CPGO520

site_idGC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO C 520
ChainResidue
CTHR247
CPHE252
CPRO255
CARG306
CLEU322
CPGO519
CHOH776

site_idGC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO C 521
ChainResidue
CASP282
CASP285
CLEU288
CHOH637

site_idGC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 522
ChainResidue
CPRO417
CLEU419

site_idGC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO C 523
ChainResidue
CGLN263
CLEU265

site_idHC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO C 524
ChainResidue
CLYS140
CTHR247
CGLY248
CSER250
CHOH740

site_idHC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 501
ChainResidue
DHIS222
DHIS226
DHIS232
ZSER45
ZCL101

site_idHC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 502
ChainResidue
DHIS172
DASP174
DHIS187
DHIS200

site_idHC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 503
ChainResidue
DASP179
DGLY180
DSER182
DLEU184
DASP202
DGLU205

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA D 504
ChainResidue
DASP128
DASP203
DGLU205
DHOH720

site_idHC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 505
ChainResidue
DASP162
DASN194
DGLY196
DASP198
DHOH684
DHOH781

site_idHC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA D 506
ChainResidue
DASP291
DASP335
DSER383
DASP432
DHOH621
DHOH632
DHOH718

site_idHC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 507
ChainResidue
DILE293
DALA337
DALA385
DVAL434
DCL508
DCL509

site_idHC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL D 508
ChainResidue
DTHR294
DCA507
DHOH676

site_idIC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL D 509
ChainResidue
DILE293
DALA337
DALA385
DALA433
DVAL434
DCA507

site_idIC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO D 510
ChainResidue
DSER146
DTHR149
DPRO150
DLEU151
DASP270

site_idIC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 511
ChainResidue
DPHE252
DMET253
DARG306
DASN332

site_idIC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO D 512
ChainResidue
DASN194
DASP198

site_idIC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 513
ChainResidue
DARG297
DPHE326
DGLY359
DTYR360

site_idIC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 514
ChainResidue
DASP256
DPRO275
DHIS277
DHOH686

site_idIC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO D 515
ChainResidue
CILE459
DGLU421
DGLY426
DILE427
DGLY428
DHOH640

site_idIC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PGO D 516
ChainResidue
DASP285
DSER287
DLEU288
DSER289
DLYS304
DHOH780

site_idIC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 517
ChainResidue
CPRO464
CHOH775
DASN445
DILE448

site_idJC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO D 518
ChainResidue
DTYR435
DLYS437
DGLN449
DILE468

site_idJC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO D 519
ChainResidue
DLYS140
DASN215
DTYR246
DGLY248
DLYS249

site_idJC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO D 520
ChainResidue
DTHR110
DLYS112
DPRO191
DGLY192
DHOH736

site_idJC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL Y 101
ChainResidue
CHIS222
CHIS226
CZN501
CHOH715
YARG44
YSER45
YTYR46

site_idJC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL Z 101
ChainResidue
DHIS222
DHIS226
DZN501
DHOH714
ZARG44
ZSER45
ZTYR46

Functional Information from PROSITE/UniProt
site_idPS00024
Number of Residues16
DetailsHEMOPEXIN Hemopexin domain signature. TKsfWpelPnRIDAAY
ChainResidueDetails
ATHR323-TYR338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues196
DetailsRepeat: {"description":"Hemopexin 1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues184
DetailsRepeat: {"description":"Hemopexin 2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues192
DetailsRepeat: {"description":"Hemopexin 3"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues172
DetailsRepeat: {"description":"Hemopexin 4"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues280
DetailsRegion: {"description":"Interaction with TIMP2"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues84
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues812
DetailsRegion: {"description":"Interaction with collagen"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues44
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues4
DetailsActive site: {"evidences":[{"source":"PubMed","id":"23913860","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues80
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10926524","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10986126","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15734645","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15780611","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17196980","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17623656","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19422229","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20005097","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20726512","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22689580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23810497","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23913860","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8969305","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues32
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10926524","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10986126","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15734645","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15780611","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17196980","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17623656","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19422229","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20005097","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20726512","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22689580","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23810497","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23913860","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues4
DetailsModified residue: {"description":"Phosphotyrosine; by PKDCC","evidences":[{"source":"PubMed","id":"25171405","evidenceCode":"ECO:0000303"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues4
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"8576151","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues4
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

245011

PDB entries from 2025-11-19

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