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4FVL

Human collagenase 3 (MMP-13) full form with peptides from pro-domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS222
AHIS226
AHIS232
CSER45
CHOH204

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHIS172
AASP174
AHIS187
AHIS200

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 503
ChainResidue
AASP179
AGLY180
ASER182
ALEU184
AASP202
AGLU205

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 504
ChainResidue
AASP162
AASN194
AGLY196
AASP198
AHOH619
AHOH663

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 505
ChainResidue
AASP291
AASP335
ASER383
AASP432
AHOH605
AHOH612
AHOH669

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 506
ChainResidue
AILE293
AALA337
AALA385
AVAL434
ACL508
ACL509

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 507
ChainResidue
AASP128
AASP203
AGLU205

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL A 508
ChainResidue
AALA292
AILE293
AALA337
AALA385
AALA433
AVAL434
ACA506

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 509
ChainResidue
AILE293
ATHR294
ACA506
AHOH621
AHOH647

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 510
ChainResidue
ALYS140
AASN215
ATYR246
AGLY248
ALYS249
ASER250
AHIS251
APHE252
APGO520

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 512
ChainResidue
ASER289
ALEU290
AASP291
AASP432

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 513
ChainResidue
ATHR247
AMET253
AARG306

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGO A 514
ChainResidue
APRO236
AGLY237
AALA238
AILE243
ATHR245
ALEU322
AHOH631
CTYR46
CHOH202

site_idBC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PGO A 515
ChainResidue
AASP270

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 516
ChainResidue
AGLY439
APGO517
BASP128

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 517
ChainResidue
ATYR440
ATRP455
APGO516
AHOH675
BPRO127

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 518
ChainResidue
AGLU389
ATHR391
AGLY392

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO A 519
ChainResidue
APRO281
AASP282
AASP285
ASER287
ALEU288
ALYS304
APEG531

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 520
ChainResidue
ALYS136
ASER209
AASN215
AGOL510
AHOH650

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO A 521
ChainResidue
ASER210
AHOH680
BTRP455
ATHR208

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 522
ChainResidue
AGLN401
APRO417

site_idCC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 523
ChainResidue
ATYR125
AHIS131
ALEU419

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PGO A 524
ChainResidue
ASER295
AGLU339
APRO341
AHIS387
AGLU389
AGLU436
AHOH647

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO A 525
ChainResidue
ATYR440
ASER453
ATRP455
ASER456
AVAL460

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO A 526
ChainResidue
ATYR416
AARG418
AASP423

site_idCC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO A 527
ChainResidue
ATYR366
APRO367

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG A 528
ChainResidue
ATHR300
ALEU311
AILE468
ATRP470
AHOH651
AHOH654

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 529
ChainResidue
AGLY248
ALYS324
APRO331
AASN332
AARG333
AARG350
DGLU33

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PEG A 530
ChainResidue
ATHR280
AASP282

site_idDC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 531
ChainResidue
ASER287
ALEU288
ASER289
ALYS304
AGLY446
APRO447
APGO519

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 532
ChainResidue
APRO313
AGLN314
ASER325
CPRO49
CTHR50

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 501
ChainResidue
BHIS222
BHIS226
BHIS232
DSER45
DHOH207

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 502
ChainResidue
BHIS172
BASP174
BHIS187
BHIS200

site_idDC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 503
ChainResidue
BASP179
BGLY180
BSER182
BLEU184
BASP202
BGLU205

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 504
ChainResidue
BASP162
BASN194
BGLY196
BASP198
BHOH633
BHOH713

site_idDC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 505
ChainResidue
BASP291
BASP335
BSER383
BASP432
BHOH606
BHOH615
BHOH661

site_idEC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 506
ChainResidue
BILE293
BALA337
BALA385
BVAL434
BCL508
BHOH617

site_idEC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA B 507
ChainResidue
BASP128
BASP203
BGLU205

site_idEC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 508
ChainResidue
BILE293
BALA337
BALA385
BVAL434
BCA506

site_idEC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 509
ChainResidue
BGLU133
BLYS136
BLYS140
BSER209
BASN215
BGOL513

site_idEC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 510
ChainResidue
BHIS343
BASN358
BHOH690

site_idEC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 511
ChainResidue
APRO464
BASN445
BILE448

site_idEC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 512
ChainResidue
AARG458
AILE459
AVAL460
AARG461
BGLU421
BGLY426
BILE427
BGLY428
BHOH625

site_idEC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 513
ChainResidue
BLYS140
BASN215
BTYR246
BGLY248
BLYS249
BSER250
BPHE252
BGOL509

site_idEC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 514
ChainResidue
BLYS380
BSER398

site_idFC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 515
ChainResidue
BPRO313
BLYS437
BHOH637
BHOH658
DPRO49
DTHR50

site_idFC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 516
ChainResidue
BLYS234
BASP235
BPRO236
BHOH687

site_idFC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO B 517
ChainResidue
BTYR195
BASP198
BHIS200

site_idFC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO B 518
ChainResidue
BPRO376
BGLU378
BGLN401

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO B 519
ChainResidue
BSER146
BTHR149
BPRO150
BLEU151
BHOH715

site_idFC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO B 520
ChainResidue
BHIS232
BSER233
BLYS234
BPRO242
DPEG101

site_idFC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGO B 521
ChainResidue
BTHR110
BLYS112
BSER114
BGLY192
BHOH708

site_idFC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 522
ChainResidue
BTYR435
BLYS437
BGLN449
BMET463

site_idFC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 524
ChainResidue
BMET253
BPRO255
BPRO278
BARG306

site_idGC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGO B 525
ChainResidue
BHIS340
BHIS387
BASP407
BHOH691

site_idGC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO B 526
ChainResidue
BARG297
BASP344

site_idGC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGO B 527
ChainResidue
BASP282
BASP285

site_idGC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG B 528
ChainResidue
BSER211
BTHR245
BTYR246
BHOH712
DHIS48

site_idGC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PEG B 529
ChainResidue
BTYR104
BHOH669

site_idGC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG B 530
ChainResidue
BPRO236
BPHE241
BILE243
BTHR245
BGLN314
BLEU322
BSER325
BHOH624
BHOH692

site_idGC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGO C 101
ChainResidue
CALA39
CARG41
CTYR42

site_idGC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG D 101
ChainResidue
BPRO242
BPGO520
DARG44
DSER45
DTYR47
DHOH206
DHOH210

Functional Information from PROSITE/UniProt
site_idPS00024
Number of Residues16
DetailsHEMOPEXIN Hemopexin domain signature. TKsfWpelPnRIDAAY
ChainResidueDetails
ATHR323-TYR338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000305|PubMed:23913860
ChainResidueDetails
AALA223
BALA223

site_idSWS_FT_FI2
Number of Residues40
DetailsBINDING: BINDING => ECO:0000269|PubMed:10926524, ECO:0000269|PubMed:10986126, ECO:0000269|PubMed:15734645, ECO:0000269|PubMed:15780611, ECO:0000269|PubMed:17196980, ECO:0000269|PubMed:17623656, ECO:0000269|PubMed:19422229, ECO:0000269|PubMed:20005097, ECO:0000269|PubMed:20726512, ECO:0000269|PubMed:22689580, ECO:0000269|PubMed:23810497, ECO:0000269|PubMed:23913860, ECO:0000269|PubMed:8969305
ChainResidueDetails
AASP128
AASP202
AASP203
AGLU205
AASP291
AILE293
AASP335
AALA337
ASER383
AALA385
AASP432
AASP162
AVAL434
BASP128
BASP162
BASP179
BGLY180
BSER182
BLEU184
BASN194
BGLY196
BASP198
AASP179
BASP202
BASP203
BGLU205
BASP291
BILE293
BASP335
BALA337
BSER383
BALA385
BASP432
AGLY180
BVAL434
ASER182
ALEU184
AASN194
AGLY196
AASP198

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:10926524, ECO:0000269|PubMed:10986126, ECO:0000269|PubMed:15734645, ECO:0000269|PubMed:15780611, ECO:0000269|PubMed:17196980, ECO:0000269|PubMed:17623656, ECO:0000269|PubMed:19422229, ECO:0000269|PubMed:20005097, ECO:0000269|PubMed:20726512, ECO:0000269|PubMed:22689580, ECO:0000269|PubMed:23810497, ECO:0000269|PubMed:23913860
ChainResidueDetails
AHIS172
BASP174
BHIS187
BHIS200
BHIS222
BHIS226
BHIS232
BMET240
AASP174
AHIS187
AHIS200
AHIS222
AHIS226
AHIS232
AMET240
BHIS172

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphotyrosine; by PKDCC => ECO:0000303|PubMed:25171405
ChainResidueDetails
ATYR366
BTYR366

site_idSWS_FT_FI5
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:8576151
ChainResidueDetails
AASN117
BASN117

site_idSWS_FT_FI6
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255
ChainResidueDetails
AASN152
BASN152

219140

PDB entries from 2024-05-01

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