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4FR8

Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin

Functional Information from GO Data
ChainGOidnamespacecontents
A0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
A0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
A0005739cellular_componentmitochondrion
A0005759cellular_componentmitochondrial matrix
A0005975biological_processcarbohydrate metabolic process
A0006066biological_processalcohol metabolic process
A0006068biological_processethanol catabolic process
A0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
A0009055molecular_functionelectron transfer activity
A0016491molecular_functionoxidoreductase activity
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0018547molecular_functionnitroglycerin reductase activity
A0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
A0046185biological_processaldehyde catabolic process
A0051287molecular_functionNAD binding
A0070062cellular_componentextracellular exosome
A0106435molecular_functioncarboxylesterase activity
A1903179biological_processregulation of dopamine biosynthetic process
A1905627biological_processregulation of serotonin biosynthetic process
B0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
B0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
B0005739cellular_componentmitochondrion
B0005759cellular_componentmitochondrial matrix
B0005975biological_processcarbohydrate metabolic process
B0006066biological_processalcohol metabolic process
B0006068biological_processethanol catabolic process
B0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
B0009055molecular_functionelectron transfer activity
B0016491molecular_functionoxidoreductase activity
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0018547molecular_functionnitroglycerin reductase activity
B0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
B0046185biological_processaldehyde catabolic process
B0051287molecular_functionNAD binding
B0070062cellular_componentextracellular exosome
B0106435molecular_functioncarboxylesterase activity
B1903179biological_processregulation of dopamine biosynthetic process
B1905627biological_processregulation of serotonin biosynthetic process
C0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
C0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
C0005739cellular_componentmitochondrion
C0005759cellular_componentmitochondrial matrix
C0005975biological_processcarbohydrate metabolic process
C0006066biological_processalcohol metabolic process
C0006068biological_processethanol catabolic process
C0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
C0009055molecular_functionelectron transfer activity
C0016491molecular_functionoxidoreductase activity
C0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
C0018547molecular_functionnitroglycerin reductase activity
C0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
C0046185biological_processaldehyde catabolic process
C0051287molecular_functionNAD binding
C0070062cellular_componentextracellular exosome
C0106435molecular_functioncarboxylesterase activity
C1903179biological_processregulation of dopamine biosynthetic process
C1905627biological_processregulation of serotonin biosynthetic process
D0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
D0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
D0005739cellular_componentmitochondrion
D0005759cellular_componentmitochondrial matrix
D0005975biological_processcarbohydrate metabolic process
D0006066biological_processalcohol metabolic process
D0006068biological_processethanol catabolic process
D0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
D0009055molecular_functionelectron transfer activity
D0016491molecular_functionoxidoreductase activity
D0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
D0018547molecular_functionnitroglycerin reductase activity
D0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
D0046185biological_processaldehyde catabolic process
D0051287molecular_functionNAD binding
D0070062cellular_componentextracellular exosome
D0106435molecular_functioncarboxylesterase activity
D1903179biological_processregulation of dopamine biosynthetic process
D1905627biological_processregulation of serotonin biosynthetic process
E0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
E0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
E0005739cellular_componentmitochondrion
E0005759cellular_componentmitochondrial matrix
E0005975biological_processcarbohydrate metabolic process
E0006066biological_processalcohol metabolic process
E0006068biological_processethanol catabolic process
E0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
E0009055molecular_functionelectron transfer activity
E0016491molecular_functionoxidoreductase activity
E0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
E0018547molecular_functionnitroglycerin reductase activity
E0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
E0046185biological_processaldehyde catabolic process
E0051287molecular_functionNAD binding
E0070062cellular_componentextracellular exosome
E0106435molecular_functioncarboxylesterase activity
E1903179biological_processregulation of dopamine biosynthetic process
E1905627biological_processregulation of serotonin biosynthetic process
F0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
F0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
F0005739cellular_componentmitochondrion
F0005759cellular_componentmitochondrial matrix
F0005975biological_processcarbohydrate metabolic process
F0006066biological_processalcohol metabolic process
F0006068biological_processethanol catabolic process
F0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
F0009055molecular_functionelectron transfer activity
F0016491molecular_functionoxidoreductase activity
F0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
F0018547molecular_functionnitroglycerin reductase activity
F0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
F0046185biological_processaldehyde catabolic process
F0051287molecular_functionNAD binding
F0070062cellular_componentextracellular exosome
F0106435molecular_functioncarboxylesterase activity
F1903179biological_processregulation of dopamine biosynthetic process
F1905627biological_processregulation of serotonin biosynthetic process
G0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
G0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
G0005739cellular_componentmitochondrion
G0005759cellular_componentmitochondrial matrix
G0005975biological_processcarbohydrate metabolic process
G0006066biological_processalcohol metabolic process
G0006068biological_processethanol catabolic process
G0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
G0009055molecular_functionelectron transfer activity
G0016491molecular_functionoxidoreductase activity
G0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
G0018547molecular_functionnitroglycerin reductase activity
G0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
G0046185biological_processaldehyde catabolic process
G0051287molecular_functionNAD binding
G0070062cellular_componentextracellular exosome
G0106435molecular_functioncarboxylesterase activity
G1903179biological_processregulation of dopamine biosynthetic process
G1905627biological_processregulation of serotonin biosynthetic process
H0004029molecular_functionaldehyde dehydrogenase (NAD+) activity
H0004030molecular_functionaldehyde dehydrogenase [NAD(P)+] activity
H0005739cellular_componentmitochondrion
H0005759cellular_componentmitochondrial matrix
H0005975biological_processcarbohydrate metabolic process
H0006066biological_processalcohol metabolic process
H0006068biological_processethanol catabolic process
H0008957molecular_functionphenylacetaldehyde dehydrogenase (NAD+) activity
H0009055molecular_functionelectron transfer activity
H0016491molecular_functionoxidoreductase activity
H0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
H0018547molecular_functionnitroglycerin reductase activity
H0043878molecular_functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity
H0046185biological_processaldehyde catabolic process
H0051287molecular_functionNAD binding
H0070062cellular_componentextracellular exosome
H0106435molecular_functioncarboxylesterase activity
H1903179biological_processregulation of dopamine biosynthetic process
H1905627biological_processregulation of serotonin biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE TNG A 601
ChainResidue
AASN169
ASER303
AASP457
APHE459
AHOH1000
APHE170
ALEU173
AMET174
ATRP177
AGLN268
APHE296
ASER301
ACYS302

site_idAC2
Number of Residues28
DetailsBINDING SITE FOR RESIDUE NAD A 1001
ChainResidue
AILE165
AILE166
ATRP168
ALYS192
AALA194
AGLU195
AGLN196
AGLY225
AGLY229
AALA230
APHE243
AGLY245
ASER246
AILE249
AVAL252
AILE253
AGLN349
ALYS352
AGLU399
APHE401
AMG603
AHOH816
AHOH926
AHOH942
AHOH980
AHOH982
AHOH994
AHOH996

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 603
ChainResidue
AHOH942
AHOH980
ANAD1001

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE URE A 604
ChainResidue
APHE70
AGLU157
APRO158
AVAL159
AHOH776
AHOH985
BTYR468

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 605
ChainResidue
ATHR39
AVAL40
AASP109
AGLN196
AHOH806
AHOH1042

site_idAC6
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ADP B 1001
ChainResidue
BILE165
BILE166
BTRP168
BLYS192
BALA194
BGLU195
BGLN196
BGLY225
BGLY229
BALA230
BPHE243
BSER246
BILE249
BILE253
BMG1002
BHOH1272
BHOH1276
BHOH1279
BHOH1364

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG B 1002
ChainResidue
BADP1001

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE URE B 1003
ChainResidue
ATYR468
BGLU157
BPRO158
BVAL159
BHOH1184
BHOH1362

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 1004
ChainResidue
BTHR39
BVAL40
BASP109
BGLN196
BHOH1414

site_idBC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD C 1001
ChainResidue
CGLY245
CSER246
CILE249
CILE253
CGLN349
CLYS352
CGLU399
CPHE401
CMG1002
CHOH1273
CHOH1361
CHOH1367
CILE165
CILE166
CTRP168
CLYS192
CALA194
CGLU195
CGLN196
CGLY225
CGLY229
CALA230
CPHE243

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG C 1002
ChainResidue
CNAD1001
CHOH1315

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE URE C 1003
ChainResidue
CGLU157
CPRO158
CVAL159
CHOH1291
CHOH1304

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA C 1004
ChainResidue
CTHR39
CVAL40
CASP109
CGLN196
CHOH1438

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE URE C 1005
ChainResidue
CGLN13
CASP336

site_idBC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE NAD D 1001
ChainResidue
DILE165
DILE166
DTRP168
DLYS192
DGLU195
DGLN196
DGLY225
DGLY229
DALA230
DPHE243
DGLY245
DSER246
DILE249
DILE253
DGLN349
DLYS352
DGLU399
DPHE401
DMG1002
DHOH1299
DHOH1425
DHOH1434
DHOH1466
DHOH1484

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG D 1002
ChainResidue
DNAD1001
DHOH1415

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE URE D 1003
ChainResidue
DGLU157
DPRO158
DVAL159
DHOH1193
DHOH1393

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA D 1004
ChainResidue
DTHR39
DVAL40
DASP109
DGLN196
DHOH1296

site_idCC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ADP E 1001
ChainResidue
EILE165
EILE166
ETRP168
ELYS192
EALA194
EGLU195
EGLN196
EGLY225
EGLY229
EALA230
EPHE243
EGLY245
ESER246
EILE249
EILE253
EGLN349
EMG1002
EHOH1222
EHOH1243
EHOH1345

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG E 1002
ChainResidue
EADP1001

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA E 1003
ChainResidue
ETHR39
EVAL40
EASP109
EGLN196

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE URE E 1004
ChainResidue
ELEU436
EASN440
EHOH1317
HASN440

site_idCC5
Number of Residues24
DetailsBINDING SITE FOR RESIDUE NAD F 1001
ChainResidue
FILE165
FILE166
FTRP168
FLYS192
FALA194
FGLU195
FGLN196
FGLY225
FGLY229
FALA230
FPHE243
FGLY245
FSER246
FILE249
FILE253
FGLN349
FLYS352
FGLU399
FPHE401
FMG1002
FHOH1189
FHOH1248
FHOH1297
FHOH1340

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG F 1002
ChainResidue
FNAD1001

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA F 1003
ChainResidue
FTHR39
FVAL40
FASP109
FGLN196
FHOH1423

site_idCC8
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADP G 1001
ChainResidue
GILE165
GILE166
GTRP168
GLYS192
GALA194
GGLU195
GGLY225
GGLY229
GALA230
GPHE243
GSER246
GILE249
GILE253
GMG1002
GHOH1229
GHOH1299
GHOH1354

site_idCC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG G 1002
ChainResidue
GADP1001
GHOH1299

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA G 1003
ChainResidue
GTHR39
GVAL40
GASP109
GGLN196
GHOH1219

site_idDC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE BTB G 1004
ChainResidue
DPHE18
DTYR101
DTYR203
DHOH1174
GASP282
GMET283
GASP284
GGLU317
GARG321
GHOH1318

site_idDC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP H 1001
ChainResidue
HILE165
HILE166
HTRP168
HLYS192
HALA194
HGLU195
HGLN196
HGLY225
HGLY229
HALA230
HPHE243
HGLY245
HSER246
HILE249
HILE253
HGLN349
HMG1002
HHOH1265
HHOH1300
HHOH1308
HHOH1432
HHOH1435

site_idDC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG H 1002
ChainResidue
HADP1001
HHOH1300

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA H 1003
ChainResidue
HTHR39
HVAL40
HASP109
HGLN196
HHOH1280

Functional Information from PROSITE/UniProt
site_idPS00070
Number of Residues12
DetailsALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FfNQGQSCSAGS
ChainResidueDetails
APHE295-SER306

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AGLN268
BGLN268
CGLN268
DGLN268
EGLN268
FGLN268
GGLN268
HGLN268

site_idSWS_FT_FI2
Number of Residues8
DetailsACT_SITE: Nucleophile
ChainResidueDetails
ACYS302
BCYS302
CCYS302
DCYS302
ECYS302
FCYS302
GCYS302
HCYS302

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY245
BGLY245
CGLY245
DGLY245
EGLY245
FGLY245
GGLY245
HGLY245

site_idSWS_FT_FI4
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000250|UniProtKB:P20000
ChainResidueDetails
AASN169
BASN169
CASN169
DASN169
EASN169
FASN169
GASN169
HASN169

site_idSWS_FT_FI5
Number of Residues72
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P47738
ChainResidueDetails
ALYS35
BLYS35
BLYS56
BLYS61
BLYS142
BLYS351
BLYS366
BLYS409
BLYS411
BLYS434
CLYS35
ALYS56
CLYS56
CLYS61
CLYS142
CLYS351
CLYS366
CLYS409
CLYS411
CLYS434
DLYS35
DLYS56
ALYS61
DLYS61
DLYS142
DLYS351
DLYS366
DLYS409
DLYS411
DLYS434
ELYS35
ELYS56
ELYS61
ALYS142
ELYS142
ELYS351
ELYS366
ELYS409
ELYS411
ELYS434
FLYS35
FLYS56
FLYS61
FLYS142
ALYS351
FLYS351
FLYS366
FLYS409
FLYS411
FLYS434
GLYS35
GLYS56
GLYS61
GLYS142
GLYS351
ALYS366
GLYS366
GLYS409
GLYS411
GLYS434
HLYS35
HLYS56
HLYS61
HLYS142
HLYS351
HLYS366
ALYS409
HLYS409
HLYS411
HLYS434
ALYS411
ALYS434

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
ALYS192electrostatic stabiliser
AGLN268electrostatic stabiliser, proton acceptor, proton donor
ACYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
AGLU399electrostatic stabiliser

site_idMCSA2
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
BLYS192electrostatic stabiliser
BGLN268electrostatic stabiliser, proton acceptor, proton donor
BCYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
BGLU399electrostatic stabiliser

site_idMCSA3
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
CLYS192electrostatic stabiliser
CGLN268electrostatic stabiliser, proton acceptor, proton donor
CCYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
CGLU399electrostatic stabiliser

site_idMCSA4
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
DLYS192electrostatic stabiliser
DGLN268electrostatic stabiliser, proton acceptor, proton donor
DCYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
DGLU399electrostatic stabiliser

site_idMCSA5
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
ELYS192electrostatic stabiliser
EGLN268electrostatic stabiliser, proton acceptor, proton donor
ECYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
EGLU399electrostatic stabiliser

site_idMCSA6
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
FLYS192electrostatic stabiliser
FGLN268electrostatic stabiliser, proton acceptor, proton donor
FCYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
FGLU399electrostatic stabiliser

site_idMCSA7
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
GLYS192electrostatic stabiliser
GGLN268electrostatic stabiliser, proton acceptor, proton donor
GCYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
GGLU399electrostatic stabiliser

site_idMCSA8
Number of Residues4
DetailsM-CSA 803
ChainResidueDetails
HLYS192electrostatic stabiliser
HGLN268electrostatic stabiliser, proton acceptor, proton donor
HCYS302covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, proton acceptor, proton donor
HGLU399electrostatic stabiliser

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PDB entries from 2024-07-10

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