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4FM0

Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006287biological_processbase-excision repair, gap-filling
A0006297biological_processnucleotide-excision repair, DNA gap filling
A0008296molecular_function3'-5'-DNA exonuclease activity
A0009432biological_processSOS response
A0045004biological_processDNA replication proofreading
A0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG T 101
ChainResidue
TDG3

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 801
ChainResidue
AASP141
AGLU143
AASP315
AHOH953

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 802
ChainResidue
ATRP355
ALEU358
AARG504
TDG5
AASP113
AILE114
AASN351
AGLU354

Functional Information from PROSITE/UniProt
site_idPS00116
Number of Residues9
DetailsDNA_POLYMERASE_B DNA polymerase family B signature. YIDTDGLYA
ChainResidueDetails
ATYR538-ALA546

219869

PDB entries from 2024-05-15

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