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4FLW

Pyrococcus abyssi B family DNA polymerase bound to a dsDNA, in edition mode

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006287biological_processbase-excision repair, gap-filling
A0006297biological_processnucleotide-excision repair, DNA gap filling
A0008296molecular_function3'-5'-DNA exonuclease activity
A0009432biological_processSOS response
A0045004biological_processDNA replication proofreading
A0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 801
ChainResidue
AGLU251
AHOH901
AHOH902
AHOH903
AHOH904
AHOH905
AHOH906

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 802
ChainResidue
AGLU143
AASP315
PDG11
AASP141
AILE142

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MES A 803
ChainResidue
AASP6
ATYR7
AHOH906
AHOH970
AHOH1014
AHOH1017
AHOH1302
TDG1

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 804
ChainResidue
AASP113
AGLU354
ATRP355
ALEU358
ALYS371
AARG504

Functional Information from PROSITE/UniProt
site_idPS00116
Number of Residues9
DetailsDNA_POLYMERASE_B DNA polymerase family B signature. YIDTDGLYA
ChainResidueDetails
ATYR538-ALA546

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PDB entries from 2024-06-12

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