4F86
Structure analysis of Geranyl diphosphate methyltransferase in complex with GPP and sinefungin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0008169 | molecular_function | C-methyltransferase activity |
A | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
A | 0016740 | molecular_function | transferase activity |
A | 0032259 | biological_process | methylation |
A | 0042214 | biological_process | terpene metabolic process |
A | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0008169 | molecular_function | C-methyltransferase activity |
B | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
B | 0016740 | molecular_function | transferase activity |
B | 0032259 | biological_process | methylation |
B | 0042214 | biological_process | terpene metabolic process |
B | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0008168 | molecular_function | methyltransferase activity |
C | 0008169 | molecular_function | C-methyltransferase activity |
C | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
C | 0016740 | molecular_function | transferase activity |
C | 0032259 | biological_process | methylation |
C | 0042214 | biological_process | terpene metabolic process |
C | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0008168 | molecular_function | methyltransferase activity |
D | 0008169 | molecular_function | C-methyltransferase activity |
D | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
D | 0016740 | molecular_function | transferase activity |
D | 0032259 | biological_process | methylation |
D | 0042214 | biological_process | terpene metabolic process |
D | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
E | 0000287 | molecular_function | magnesium ion binding |
E | 0008168 | molecular_function | methyltransferase activity |
E | 0008169 | molecular_function | C-methyltransferase activity |
E | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
E | 0016740 | molecular_function | transferase activity |
E | 0032259 | biological_process | methylation |
E | 0042214 | biological_process | terpene metabolic process |
E | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
F | 0000287 | molecular_function | magnesium ion binding |
F | 0008168 | molecular_function | methyltransferase activity |
F | 0008169 | molecular_function | C-methyltransferase activity |
F | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
F | 0016740 | molecular_function | transferase activity |
F | 0032259 | biological_process | methylation |
F | 0042214 | biological_process | terpene metabolic process |
F | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
G | 0000287 | molecular_function | magnesium ion binding |
G | 0008168 | molecular_function | methyltransferase activity |
G | 0008169 | molecular_function | C-methyltransferase activity |
G | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
G | 0016740 | molecular_function | transferase activity |
G | 0032259 | biological_process | methylation |
G | 0042214 | biological_process | terpene metabolic process |
G | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
H | 0000287 | molecular_function | magnesium ion binding |
H | 0008168 | molecular_function | methyltransferase activity |
H | 0008169 | molecular_function | C-methyltransferase activity |
H | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
H | 0016740 | molecular_function | transferase activity |
H | 0032259 | biological_process | methylation |
H | 0042214 | biological_process | terpene metabolic process |
H | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
I | 0000287 | molecular_function | magnesium ion binding |
I | 0008168 | molecular_function | methyltransferase activity |
I | 0008169 | molecular_function | C-methyltransferase activity |
I | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
I | 0016740 | molecular_function | transferase activity |
I | 0032259 | biological_process | methylation |
I | 0042214 | biological_process | terpene metabolic process |
I | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
J | 0000287 | molecular_function | magnesium ion binding |
J | 0008168 | molecular_function | methyltransferase activity |
J | 0008169 | molecular_function | C-methyltransferase activity |
J | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
J | 0016740 | molecular_function | transferase activity |
J | 0032259 | biological_process | methylation |
J | 0042214 | biological_process | terpene metabolic process |
J | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
K | 0000287 | molecular_function | magnesium ion binding |
K | 0008168 | molecular_function | methyltransferase activity |
K | 0008169 | molecular_function | C-methyltransferase activity |
K | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
K | 0016740 | molecular_function | transferase activity |
K | 0032259 | biological_process | methylation |
K | 0042214 | biological_process | terpene metabolic process |
K | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
L | 0000287 | molecular_function | magnesium ion binding |
L | 0008168 | molecular_function | methyltransferase activity |
L | 0008169 | molecular_function | C-methyltransferase activity |
L | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
L | 0016740 | molecular_function | transferase activity |
L | 0032259 | biological_process | methylation |
L | 0042214 | biological_process | terpene metabolic process |
L | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SFG A 501 |
Chain | Residue |
A | GLN30 |
A | GLN140 |
A | CYS162 |
A | ASN163 |
A | MET164 |
A | ASN180 |
A | GLU181 |
A | SER182 |
A | TYR185 |
A | VAL186 |
A | GPP502 |
A | HIS57 |
A | HIS58 |
A | GLY113 |
A | CYS114 |
A | GLY115 |
A | SER119 |
A | THR135 |
A | LEU136 |
site_id | AC2 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE GPP A 502 |
Chain | Residue |
A | TRP37 |
A | ARG42 |
A | VAL44 |
A | ASN45 |
A | HIS57 |
A | TYR59 |
A | GLU181 |
A | MET184 |
A | PHE230 |
A | ARG268 |
A | PHE281 |
A | SFG501 |
A | MG503 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 503 |
Chain | Residue |
A | VAL44 |
A | ASN45 |
A | HIS58 |
A | GLU89 |
A | GPP502 |
site_id | AC4 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SFG B 501 |
Chain | Residue |
B | GLN30 |
B | TRP37 |
B | HIS57 |
B | HIS58 |
B | ASP111 |
B | GLY113 |
B | CYS114 |
B | GLY115 |
B | SER119 |
B | THR135 |
B | LEU136 |
B | GLN140 |
B | CYS162 |
B | ASN163 |
B | MET164 |
B | ASN180 |
B | GLU181 |
B | SER182 |
B | TYR185 |
B | VAL186 |
B | GPP502 |
site_id | AC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE GPP B 502 |
Chain | Residue |
B | TRP37 |
B | ARG42 |
B | VAL44 |
B | ASN45 |
B | HIS57 |
B | HIS58 |
B | TYR59 |
B | GLU181 |
B | MET184 |
B | PHE230 |
B | ARG268 |
B | SFG501 |
B | MG503 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG B 503 |
Chain | Residue |
B | ASN45 |
B | HIS58 |
B | GLU89 |
B | GPP502 |
site_id | AC7 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE SFG C 501 |
Chain | Residue |
C | TRP37 |
C | HIS57 |
C | HIS58 |
C | GLY113 |
C | CYS114 |
C | GLY115 |
C | THR135 |
C | LEU136 |
C | GLN140 |
C | CYS162 |
C | ASN163 |
C | MET164 |
C | ASN180 |
C | GLU181 |
C | SER182 |
C | TYR185 |
C | VAL186 |
C | GPP502 |
site_id | AC8 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE GPP C 502 |
Chain | Residue |
C | MET184 |
C | TYR185 |
C | GLY210 |
C | PHE230 |
C | ARG268 |
C | THR275 |
C | PHE281 |
C | PHE290 |
C | SFG501 |
C | MG503 |
C | ARG42 |
C | VAL44 |
C | ASN45 |
C | HIS57 |
C | HIS58 |
C | TYR59 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C 503 |
Chain | Residue |
C | ASN45 |
C | HIS58 |
C | GLU89 |
C | TYR264 |
C | GPP502 |
site_id | BC1 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE SFG D 501 |
Chain | Residue |
D | GLN30 |
D | TRP37 |
D | HIS57 |
D | HIS58 |
D | GLY113 |
D | GLY115 |
D | THR135 |
D | LEU136 |
D | GLN140 |
D | CYS162 |
D | ASN163 |
D | MET164 |
D | ASN180 |
D | GLU181 |
D | SER182 |
D | TYR185 |
D | VAL186 |
D | GPP502 |
site_id | BC2 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE GPP D 502 |
Chain | Residue |
D | TRP37 |
D | ARG42 |
D | VAL44 |
D | ASN45 |
D | HIS57 |
D | HIS58 |
D | TYR59 |
D | GLU181 |
D | MET184 |
D | TYR185 |
D | PHE230 |
D | ARG268 |
D | PHE281 |
D | SFG501 |
D | MG503 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG D 503 |
Chain | Residue |
D | ASN45 |
D | HIS58 |
D | GLU89 |
D | TYR264 |
D | GPP502 |
site_id | BC4 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SFG E 501 |
Chain | Residue |
E | GLN30 |
E | ILE33 |
E | TRP37 |
E | HIS57 |
E | HIS58 |
E | GLY113 |
E | GLY115 |
E | THR135 |
E | LEU136 |
E | GLN140 |
E | CYS162 |
E | ASN163 |
E | MET164 |
E | ASN180 |
E | GLU181 |
E | SER182 |
E | TYR185 |
E | VAL186 |
E | GPP502 |
site_id | BC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE GPP E 502 |
Chain | Residue |
E | TRP37 |
E | ARG42 |
E | VAL44 |
E | ASN45 |
E | HIS57 |
E | TYR59 |
E | GLU181 |
E | MET184 |
E | TYR185 |
E | PHE230 |
E | ARG268 |
E | SFG501 |
E | MG503 |
site_id | BC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG E 503 |
Chain | Residue |
E | ASN45 |
E | HIS58 |
E | GLU89 |
E | GPP502 |
site_id | BC7 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SFG F 501 |
Chain | Residue |
F | TRP37 |
F | TYR55 |
F | HIS57 |
F | HIS58 |
F | GLY113 |
F | CYS114 |
F | GLY115 |
F | SER119 |
F | THR135 |
F | LEU136 |
F | GLN140 |
F | CYS162 |
F | ASN163 |
F | MET164 |
F | ASN180 |
F | GLU181 |
F | SER182 |
F | TYR185 |
F | GPP502 |
site_id | BC8 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE GPP F 502 |
Chain | Residue |
F | TRP37 |
F | ARG42 |
F | VAL44 |
F | ASN45 |
F | HIS57 |
F | TYR59 |
F | GLU181 |
F | MET184 |
F | TYR185 |
F | GLY210 |
F | ILE234 |
F | ARG268 |
F | PHE281 |
F | PHE290 |
F | SFG501 |
F | MG503 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG F 503 |
Chain | Residue |
F | ASN45 |
F | HIS58 |
F | GLU89 |
F | GPP502 |
site_id | CC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SFG G 501 |
Chain | Residue |
G | ILE33 |
G | TRP37 |
G | HIS57 |
G | HIS58 |
G | GLY113 |
G | CYS114 |
G | GLY115 |
G | THR135 |
G | LEU136 |
G | GLN140 |
G | CYS162 |
G | ASN163 |
G | MET164 |
G | ASN180 |
G | GLU181 |
G | SER182 |
G | TYR185 |
G | VAL186 |
G | GPP502 |
site_id | CC2 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE GPP G 502 |
Chain | Residue |
G | TRP37 |
G | ARG42 |
G | VAL44 |
G | ASN45 |
G | HIS57 |
G | TYR59 |
G | GLU181 |
G | MET184 |
G | TYR185 |
G | ILE226 |
G | PHE230 |
G | ARG268 |
G | THR275 |
G | PHE281 |
G | SFG501 |
G | MG503 |
site_id | CC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG G 503 |
Chain | Residue |
G | ASN45 |
G | HIS58 |
G | GLU89 |
G | GPP502 |
site_id | CC4 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SFG H 501 |
Chain | Residue |
H | TRP37 |
H | HIS57 |
H | HIS58 |
H | GLY113 |
H | CYS114 |
H | GLY115 |
H | SER119 |
H | THR135 |
H | LEU136 |
H | GLN140 |
H | CYS162 |
H | ASN163 |
H | MET164 |
H | ASN180 |
H | GLU181 |
H | SER182 |
H | TYR185 |
H | VAL186 |
H | GPP502 |
site_id | CC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE GPP H 502 |
Chain | Residue |
H | TRP37 |
H | ARG42 |
H | HIS57 |
H | TYR59 |
H | GLU181 |
H | MET184 |
H | TYR185 |
H | GLY210 |
H | ARG268 |
H | THR275 |
H | PHE281 |
H | SFG501 |
H | MG503 |
site_id | CC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG H 503 |
Chain | Residue |
H | HIS58 |
H | GLU89 |
H | GPP502 |
site_id | CC7 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SFG I 501 |
Chain | Residue |
I | GLN30 |
I | TRP37 |
I | HIS57 |
I | HIS58 |
I | GLY113 |
I | CYS114 |
I | GLY115 |
I | THR135 |
I | LEU136 |
I | GLN140 |
I | CYS162 |
I | ASN163 |
I | MET164 |
I | ASN180 |
I | GLU181 |
I | SER182 |
I | TYR185 |
I | VAL186 |
I | GPP502 |
site_id | CC8 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE GPP I 502 |
Chain | Residue |
I | ARG42 |
I | VAL44 |
I | ASN45 |
I | HIS57 |
I | HIS58 |
I | TYR59 |
I | GLU181 |
I | MET184 |
I | GLY210 |
I | PHE230 |
I | ARG268 |
I | PHE281 |
I | SFG501 |
I | MG503 |
site_id | CC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG I 503 |
Chain | Residue |
I | ASN45 |
I | HIS58 |
I | GLU89 |
I | GPP502 |
site_id | DC1 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE SFG J 501 |
Chain | Residue |
J | GLN30 |
J | TRP37 |
J | HIS57 |
J | HIS58 |
J | ASP111 |
J | GLY113 |
J | CYS114 |
J | GLY115 |
J | SER119 |
J | THR135 |
J | LEU136 |
J | GLN140 |
J | CYS162 |
J | ASN163 |
J | MET164 |
J | ASN180 |
J | GLU181 |
J | SER182 |
J | TYR185 |
J | VAL186 |
site_id | DC2 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE GPP J 502 |
Chain | Residue |
J | TRP37 |
J | ARG42 |
J | ASN45 |
J | HIS57 |
J | HIS58 |
J | TYR59 |
J | GLU181 |
J | MET184 |
J | TYR185 |
J | PHE230 |
J | ARG268 |
J | PHE281 |
J | MG503 |
site_id | DC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG J 503 |
Chain | Residue |
J | ASN45 |
J | HIS58 |
J | GLU89 |
J | GPP502 |
site_id | DC4 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE SFG K 501 |
Chain | Residue |
K | HIS57 |
K | HIS58 |
K | GLY113 |
K | GLY115 |
K | SER119 |
K | THR135 |
K | LEU136 |
K | GLN140 |
K | CYS162 |
K | ASN163 |
K | MET164 |
K | ASN180 |
K | GLU181 |
K | SER182 |
K | TYR185 |
K | VAL186 |
K | GPP502 |
site_id | DC5 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE GPP K 502 |
Chain | Residue |
K | ASN45 |
K | HIS57 |
K | HIS58 |
K | TYR59 |
K | GLU181 |
K | MET184 |
K | PHE230 |
K | ARG268 |
K | THR275 |
K | SFG501 |
K | MG503 |
site_id | DC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG K 503 |
Chain | Residue |
K | ASN45 |
K | HIS58 |
K | GLU89 |
K | GPP502 |
site_id | DC7 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE SFG L 501 |
Chain | Residue |
L | GLN30 |
L | TRP37 |
L | HIS57 |
L | HIS58 |
L | GLY113 |
L | GLY115 |
L | THR135 |
L | LEU136 |
L | GLN140 |
L | CYS162 |
L | ASN163 |
L | MET164 |
L | ASN180 |
L | GLU181 |
L | SER182 |
L | TYR185 |
L | VAL186 |
site_id | DC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GPP L 502 |
Chain | Residue |
L | TRP37 |
L | ARG42 |
L | ASN45 |
L | HIS57 |
L | TYR59 |
L | GLU181 |
L | MET184 |
L | PHE230 |
L | ARG268 |
L | MG503 |
site_id | DC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG L 503 |
Chain | Residue |
L | ASN45 |
L | HIS58 |
L | GLU89 |
L | GPP502 |