4F3O
DNA Polymerase I Large Fragment Complex 5
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0003677 | molecular_function | DNA binding |
D | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
D | 0006139 | biological_process | nucleobase-containing compound metabolic process |
D | 0006260 | biological_process | DNA replication |
D | 0006261 | biological_process | DNA-templated DNA replication |
D | 0008408 | molecular_function | 3'-5' exonuclease activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 A 901 |
Chain | Residue |
A | ARG517 |
A | ASN573 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 902 |
Chain | Residue |
A | ARG779 |
A | ASN780 |
A | HOH1311 |
D | PRO424 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MPD A 903 |
Chain | Residue |
D | LYS383 |
D | HOH1072 |
A | HOH1011 |
A | HOH1380 |
D | LEU352 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MN A 904 |
Chain | Residue |
A | ASP653 |
A | TYR654 |
A | ASP830 |
site_id | AC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE D3T D 901 |
Chain | Residue |
D | SER655 |
D | GLN656 |
D | HIS682 |
D | ARG702 |
D | LYS706 |
D | ALA707 |
D | TYR710 |
D | ASP830 |
D | MN904 |
D | HOH1034 |
D | HOH1078 |
D | HOH1199 |
D | HOH1223 |
D | HOH1266 |
D | HOH1309 |
D | HOH1392 |
E | 2DT29 |
F | DG3 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 D 902 |
Chain | Residue |
D | MET299 |
D | ALA300 |
D | ARG343 |
D | ARG677 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 903 |
Chain | Residue |
D | ARG306 |
D | THR308 |
D | GLU309 |
D | HOH1205 |
D | HOH1610 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MN D 904 |
Chain | Residue |
D | TYR654 |
D | ASP830 |
D | D3T901 |
D | HOH1034 |
Functional Information from PROSITE/UniProt
site_id | PS00447 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnYGivYgiSdygL |
Chain | Residue | Details |
A | ARG702-LEU721 |