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4F1I

Crystal structure of SeMet TDP2 from Caenorhabditis elegans

Functional Information from GO Data
ChainGOidnamespacecontents
A0003697molecular_functionsingle-stranded DNA binding
A0003824molecular_functioncatalytic activity
A0004518molecular_functionnuclease activity
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006302biological_processdouble-strand break repair
A0006974biological_processDNA damage response
A0016605cellular_componentPML body
A0016787molecular_functionhydrolase activity
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0070260molecular_function5'-tyrosyl-DNA phosphodiesterase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 401
ChainResidue
AGLU158
AHIS232
ASER235
AASP271
AASN273
ATRP303
AASP352
AHIS353

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 402
ChainResidue
AILE176
ATYR177
ALYS175

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 403
ChainResidue
AGLY285
ATRP326
AGLY328
ALEU330

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 404
ChainResidue
AASN150
APRO151
AASP152
ASER192

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 405
ChainResidue
AMSE110
ATHR111
AALA112
APRO329

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL A 406
ChainResidue
AHOH541

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 407
ChainResidue
ATYR178
AHIS200

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 408
ChainResidue
AALA292
ALYS332
AVAL333

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsRegion: {"description":"Interaction with 5' end of substrate DNA","evidences":[{"source":"UniProtKB","id":"Q9JJX7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"UniProtKB","id":"O95551","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"23104058","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4FVA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Interaction with 5' end of substrate DNA","evidences":[{"source":"UniProtKB","id":"Q9JJX7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

238582

PDB entries from 2025-07-09

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