Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4EUM

Crystal structure of a sugar kinase (Target EFI-502132) from Oceanicola granulosus with bound AMP, crystal form II

Functional Information from GO Data
ChainGOidnamespacecontents
A0005829cellular_componentcytosol
A0006974biological_processDNA damage response
A0008673molecular_function2-dehydro-3-deoxygluconokinase activity
A0016301molecular_functionkinase activity
A0019698biological_processD-galacturonate catabolic process
A0042840biological_processD-glucuronate catabolic process
A0046835biological_processcarbohydrate phosphorylation
A0046872molecular_functionmetal ion binding
B0005829cellular_componentcytosol
B0006974biological_processDNA damage response
B0008673molecular_function2-dehydro-3-deoxygluconokinase activity
B0016301molecular_functionkinase activity
B0019698biological_processD-galacturonate catabolic process
B0042840biological_processD-glucuronate catabolic process
B0046835biological_processcarbohydrate phosphorylation
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE AMP A 401
ChainResidue
ASER192
AHOH506
AHOH627
AHOH660
AHOH681
AHOH710
ALYS223
AASN224
AGLY225
AVAL242
AALA254
APHE258
AALA280
AALA283

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 402
ChainResidue
BGLN233
BLEU272

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 403
ChainResidue
AARG165
APRO166
AARG167

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 404
ChainResidue
AGLN233
ALEU272
AHOH590
BASN-6

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 405
ChainResidue
ALEU40
AHOH581
AHOH588
AHOH666
AHOH669
AHOH727

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AMP B 401
ChainResidue
BSER192
BGLY225
BVAL248
BALA254
BPHE258
BALA280
BALA283
BHOH511
BHOH694

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 402
ChainResidue
BARG165
BPRO166
BARG167

Functional Information from PROSITE/UniProt
site_idPS00584
Number of Residues14
DetailsPFKB_KINASES_2 pfkB family of carbohydrate kinases signature 2. DTtAAGDsfnAGLL
ChainResidueDetails
AASP250-LEU263

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon