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4ELV

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 901
ChainResidue
AASP610
AGLU786
A0R7902
AHOH1019
AHOH1048
AHOH1129
AHOH1196

site_idAC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE 0R7 A 902
ChainResidue
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
APHE667
AASP785
AMG901
ACA908
AHOH1045
AHOH1080
AHOH1196
AHOH1200
AHOH1207
AHOH1231
B0R8112
CDG204
CDG205
AARG573
AASP610

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 903
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
AHOH1090
AHOH1155
CDC209
CDC210
CHOH405

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE A 904
ChainResidue
AASP371
ATRP417
AARG431
AARG435

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 905
ChainResidue
AARG425
ALEU723
APHE724
AGLU774
ATYR811
AHOH1160
AHOH1239

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 906
ChainResidue
AASP452
ATYR455
AARG593
AARG596
AILE599
AHOH1110

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 907
ChainResidue
ALEU311
AGLU400
AARG405

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 908
ChainResidue
AASP610
ATYR611
AASP785
A0R7902

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 201
ChainResidue
BHOH335
BHOH336
BHOH337
BHOH338
CHOH437
CHOH444

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 301
ChainResidue
CDG205
CDG206
CHOH404
CHOH426
CHOH429

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 302
ChainResidue
CDG214
CHOH439
CHOH440
CHOH441
CHOH442
CHOH443

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 303
ChainResidue
AALA570
AARG728
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

218853

PDB entries from 2024-04-24

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