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4ELU

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE 0R6 A 901
ChainResidue
AARG573
AARG659
AARG660
ALYS663
ATHR664
APHE667
AASP785
AMG902
AMG903
AHOH1001
AHOH1011
AARG587
AHOH1030
AHOH1050
AHOH1063
AHOH1126
BDDG112
BGOL204
CDG204
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AASP610
ATYR611
AASP785
A0R6901
AMG903

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
AASP610
AASP785
A0R6901
AMG902
AHOH1001
AHOH1003
BDDG112

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 904
ChainResidue
AARG660
ALYS663
ALYS831
AHOH1050
AHOH1126
AHOH1305
BDDG112

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 905
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
AHOH1108
AHOH1248
CDC209
CDC210

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGE A 906
ChainResidue
ATHR447
AARG559
AARG778

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 907
ChainResidue
AASP452
ATYR455
ATYR455
AARG596
AARG596
AASP826

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 908
ChainResidue
AASP371
ATRP417
AARG435

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 909
ChainResidue
APRO501
AALA521
AGLU694

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT A 910
ChainResidue
AGLN489
AARG492
AVAL493
AGLU497

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 911
ChainResidue
AARG313
ATRP318
ALEU552
AHOH1046

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 912
ChainResidue
ATRP645
AMET646
APHE647
AGLY648
AILE684

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 913
ChainResidue
AARG425
ATRP428
AHOH1028

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE B 201
ChainResidue
AGLU337
APRO338
ATYR339
ALYS340
BDG101

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 202
ChainResidue
BHOH327
BHOH329
BHOH330
BHOH331
CHOH440

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 203
ChainResidue
BDC109
BHOH312
BHOH314
CDC210
CHOH403
ALYS540
AHOH1292
BDG107
BDG108

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 204
ChainResidue
AARG587
ATHR664
A0R6901
BDC111
BDDG112
BHOH325
CDG204

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT C 301
ChainResidue
CDC207
CDG208
CHOH410
CHOH429
CHOH434
CHOH440

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 302
ChainResidue
AARG728
CDG206
CDC207
CHOH417

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL C 303
ChainResidue
BDC103
CDG213
CDG214

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 304
ChainResidue
CDC205
CDG206
CHOH402
CHOH407
CHOH419

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-09-11

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