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4ELT

Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing modified pyrimidines

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues27
DetailsBINDING SITE FOR RESIDUE 0R5 A 901
ChainResidue
AARG573
AARG659
AARG660
ALYS663
ATHR664
APHE667
AASP785
AMG902
AMG903
AHOH1002
AHOH1006
AARG587
AHOH1056
AHOH1066
AHOH1067
AHOH1084
AHOH1115
BDOC112
CDA204
CDG205
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AASP610
ATYR611
AASP785
A0R5901
AMG903

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
AASP610
AASP785
A0R5901
AMG902
AHOH1001
AHOH1002
BDOC112

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 904
ChainResidue
AARG660
ALYS663
ALYS831
AHOH1067
AHOH1115
BDOC112

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 905
ChainResidue
AASP452
ATYR455
AARG596
AARG596
AASP826

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 906
ChainResidue
AGLY672
AGLU745
AARG746
CDA203

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 907
ChainResidue
ATHR544
ATYR545
APRO579
AASN580
AASN583
AGOL910
AHOH1136
CDC209
CDC210

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 908
ChainResidue
AARG313
ATRP318
AASP551

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 909
ChainResidue
ALYS354
AASP355
AARG563
AGLN566
AHOH1009
AHOH1073
AHOH1128

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 910
ChainResidue
ALEU552
AASP578
APRO579
AGOL907
AHOH1018
CDC209
CDC210

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 911
ChainResidue
ALYS508
ATHR509
AARG715
ALEU733
AGLU734
AARG736
AHOH1134

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 912
ChainResidue
ASER460
ALYS542

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 913
ChainResidue
AARG728
ATYR729
AHOH1013
AHOH1173

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 914
ChainResidue
AGLU347
AARG349
AGLY370
AASP371

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 201
ChainResidue
BHOH313
BHOH315
BHOH323
CDG208
CDC209
CHOH416
BDG107
BDG108

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 301
ChainResidue
AARG728
AHOH1173
CDG206
CDC207

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG C 302
ChainResidue
CHOH432
CHOH433
CHOH434
CHOH435

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

219140

PDB entries from 2024-05-01

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