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4E0U

Crystal structure of CdpNPT in complex with thiolodiphosphate and (S)-benzodiazependione

Functional Information from GO Data
ChainGOidnamespacecontents
A0004177molecular_functionaminopeptidase activity
A0004659molecular_functionprenyltransferase activity
A0006508biological_processproteolysis
A0009820biological_processalkaloid metabolic process
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
B0004177molecular_functionaminopeptidase activity
B0004659molecular_functionprenyltransferase activity
B0006508biological_processproteolysis
B0009820biological_processalkaloid metabolic process
B0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 0MV A 501
ChainResidue
ATHR108
ALEU109
AGLU116
AVAL201
ATHR203
APHE223
AMET349
AIMD503
AEDO504

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PIS A 502
ChainResidue
AARG129
ALYS219
ATYR221
AARG284
ALYS286
ATYR288
ALYS364
ATYR366
ATYR431
ATYR435
AHOH615

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IMD A 503
ChainResidue
AMET349
ATYR366
ATRP419
A0MV501

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 504
ChainResidue
ATHR108
AGLU116
ATRP419
APHE437
A0MV501

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 505
ChainResidue
ALEU369
AILE372
AGLU374
AILE377
ATHR414
AGLN417

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 506
ChainResidue
ALEU47
APHE49
AHOH614
BTYR137
BGLN138

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 0MV B 501
ChainResidue
BTHR108
BLEU109
BGLU116
BVAL201
BTHR203
BPHE223
BMET349
BEDO503
BIMD504

site_idAC8
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PIS B 502
ChainResidue
BARG129
BLYS219
BTYR221
BARG284
BLYS286
BTYR288
BLYS364
BTYR366
BTYR431
BTYR435
BHOH612
BHOH617

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 503
ChainResidue
BTHR108
BGLU116
BTRP419
BPHE437
B0MV501

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IMD B 504
ChainResidue
BMET349
BTYR366
BTRP419
BTYR435
B0MV501

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 505
ChainResidue
ATYR137
AGLN138
BLEU47
BLEU48
BPHE49

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:22683356, ECO:0007744|PDB:4E0U
ChainResidueDetails
ATHR108
AGLU116
APHE223
BTHR108
BGLU116
BPHE223

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q4WAW7
ChainResidueDetails
AARG129
BLYS219
BTYR221
BLYS286
BTYR288
BTYR366
BTYR431
BTYR435
ALYS219
ATYR221
ALYS286
ATYR288
ATYR366
ATYR431
ATYR435
BARG129

221716

PDB entries from 2024-06-26

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