4DWQ
RNA ligase RtcB-GMP/Mn(2+) complex
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE 5GP A 501 |
| Chain | Residue |
| A | ASN202 |
| A | SER385 |
| A | HIS404 |
| A | ALA406 |
| A | GLY407 |
| A | GLU446 |
| A | TYR451 |
| A | LYS480 |
| A | MN502 |
| A | POP509 |
| A | HOH698 |
| A | PHE204 |
| A | HOH764 |
| A | GLU206 |
| A | HIS234 |
| A | HIS329 |
| A | PRO378 |
| A | GLY379 |
| A | SER380 |
| A | MET381 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MN A 502 |
| Chain | Residue |
| A | CYS98 |
| A | HIS234 |
| A | HIS329 |
| A | 5GP501 |
| A | HOH807 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MLI A 503 |
| Chain | Residue |
| A | TYR70 |
| A | GLY93 |
| A | TYR94 |
| A | ASP95 |
| A | ASN330 |
| A | LYS351 |
| site_id | AC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE MLI A 504 |
| Chain | Residue |
| A | LYS58 |
| A | GLU338 |
| A | MET395 |
| A | LYS396 |
| A | GLU397 |
| A | THR398 |
| A | PHE399 |
| A | HOH830 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL A 505 |
| Chain | Residue |
| A | ASN106 |
| A | GLU111 |
| A | GLN313 |
| A | ASP318 |
| A | LEU319 |
| B | ARG7 |
| B | TRP13 |
| B | GLU32 |
| B | LYS39 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PO4 A 506 |
| Chain | Residue |
| A | ARG190 |
| A | GLN194 |
| A | GLY239 |
| A | HOH706 |
| A | HOH767 |
| B | SER439 |
| B | MET440 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PO4 A 507 |
| Chain | Residue |
| A | GLU181 |
| A | ALA182 |
| A | SER184 |
| A | ARG280 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PO4 A 508 |
| Chain | Residue |
| A | TRP162 |
| A | GLU163 |
| A | ARG164 |
| A | GLU316 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE POP A 509 |
| Chain | Residue |
| A | HIS67 |
| A | ASN202 |
| A | ARG408 |
| A | ARG412 |
| A | TYR451 |
| A | 5GP501 |
| site_id | BC1 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE 5GP B 501 |
| Chain | Residue |
| B | ASN202 |
| B | PHE204 |
| B | GLU206 |
| B | HIS234 |
| B | HIS329 |
| B | PRO378 |
| B | GLY379 |
| B | SER380 |
| B | MET381 |
| B | SER385 |
| B | HIS404 |
| B | ALA406 |
| B | GLY407 |
| B | TYR451 |
| B | LYS480 |
| B | MN502 |
| B | HOH689 |
| B | HOH761 |
| B | HOH762 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MN B 502 |
| Chain | Residue |
| B | CYS98 |
| B | HIS234 |
| B | HIS329 |
| B | 5GP501 |
| site_id | BC3 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE MLI B 503 |
| Chain | Residue |
| B | PHE399 |
| B | HOH769 |
| B | LYS58 |
| B | TYR59 |
| B | GLU338 |
| B | MET395 |
| B | LYS396 |
| B | GLU397 |
| B | THR398 |
| site_id | BC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 504 |
| Chain | Residue |
| A | LYS125 |
| A | ARG436 |
| B | GLN134 |
| B | GLN189 |
| B | ARG190 |
| B | GLN194 |
| B | PO4506 |
| B | HOH637 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PO4 B 505 |
| Chain | Residue |
| A | LYS6 |
| B | ARG104 |
| B | ARG168 |
| B | ALA221 |
| B | TYR222 |
| B | TYR368 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PO4 B 506 |
| Chain | Residue |
| A | ALA438 |
| B | GLY132 |
| B | ARG190 |
| B | GLN194 |
| B | ARG238 |
| B | GLY239 |
| B | GOL504 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Active site: {"description":"GMP-histidine intermediate","evidences":[{"source":"PubMed","id":"22949672","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23560983","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 34 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"22949672","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23560983","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
