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4DSI

Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus with duplex DNA, Se-dGTP and Calcium

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0004518molecular_functionnuclease activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006302biological_processdouble-strand break repair
A0006974biological_processDNA damage response
A0008408molecular_function3'-5' exonuclease activity
A0046872molecular_functionmetal ion binding
A0071897biological_processDNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 901
ChainResidue
AGLU321
APHE371
AARG375
AASP409
AVAL410
AASP425
ALYS450
AHOH1154
AHOH1198

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 902
ChainResidue
ATHR586
ATYR587
ALEU591
APRO621
AASN622
AASN625
AHOH1080
CDA5

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 903
ChainResidue
ATRP382
APHE490
AALA491
ALYS601

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 904
ChainResidue
ATYR327
AASP372
ALYS374
APHE606
AASN607
AGLN608
AHOH1027
AHOH1043

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 905
ChainResidue
AGLY715
AILE716
APHE740
AMET750

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 906
ChainResidue
AMET299
AALA300
AARG343
AARG677

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 907
ChainResidue
ATYR714
APHE786
AARG789
AHOH1085
CDC1

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 908
ChainResidue
AHIS682
AARG702
ALYS706
AHOH1158

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE DGP C 101
ChainResidue
BDC4
CDG9

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA C 102
ChainResidue
AASN527
AASN529
CDT7
CDC8

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL
ChainResidueDetails
AARG702-LEU721

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PDB entries from 2024-10-09

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