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4DQQ

Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mg2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0008408molecular_function3'-5' exonuclease activity
D0003676molecular_functionnucleic acid binding
D0003677molecular_functionDNA binding
D0003887molecular_functionDNA-directed DNA polymerase activity
D0006139biological_processnucleobase-containing compound metabolic process
D0006260biological_processDNA replication
D0006261biological_processDNA-templated DNA replication
D0008408molecular_function3'-5' exonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CTP A 901
ChainResidue
AGLU469
AGLN470
AASP471
AARG472
ALEU473
ALEU767
AHIS768
AHOH1451

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 902
ChainResidue
AASN780
AHOH1132
AHOH1179
AHOH1318
DARG423
DPRO424
AARG779

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD A 903
ChainResidue
AHOH1027
AHOH1287
DLEU352
DLYS383
DHOH1037

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 904
ChainResidue
AGLU321
AVAL322
AVAL323
AASP425
AARG435
AHOH1291

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE MES A 905
ChainResidue
AARG615
AALA658
APHE710
AVAL713
ATYR714
AASN793
AILE796
AGLN797
AHOH1398
BDOC29
CDG4

site_idAC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE CTP D 901
ChainResidue
DARG615
DGLN656
DALA658
DHIS682
DARG702
DLYS706
DPHE710
DASP830
DMG902
DHOH1035
DHOH1040
DHOH1050
DHOH1086
DHOH1092
DHOH1154
DHOH1319
DHOH1330
DHOH1356
DHOH1527
DHOH1556
DHOH1595
EDOC29
FDG3
FDG4

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG D 902
ChainResidue
DTYR654
DASP830
DCTP901
DHOH1595

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 903
ChainResidue
DMET299
DALA300
DARG343
DARG677

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD D 904
ChainResidue
ALEU352
ALYS383
DHOH1065
DHOH1099

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MPD D 905
ChainResidue
AGLY504
ALYS505
DALA353
DASP354
DHOH1193
DHOH1313
DHOH1543

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL
ChainResidueDetails
AARG702-LEU721

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PDB entries from 2024-09-04

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