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4DL8

Crystal structure of Trypanosoma brucei dUTPase with dUMP, planar [AlF3-OPO3] transition state analogue, Mg2+, and Na+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004170molecular_functiondUTP diphosphatase activity
A0005654cellular_componentnucleoplasm
A0005829cellular_componentcytosol
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE UMP A 301
ChainResidue
AGLN21
APHE83
AASN212
AARG215
ATYR220
ALYS227
AAF3302
APO4303
AMG304
AHOH404
AHOH405
ALEU24
AHOH437
AASN25
AGLU48
ALYS59
ATRP60
ATRP61
AASP79
AHIS82

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE AF3 A 302
ChainResidue
AGLU48
AGLU51
AASP79
ALYS208
AARG215
ALYS227
AASN235
AUMP301
APO4303
AMG304
AMG305
ANA306
AHOH401
AHOH485

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 A 303
ChainResidue
AGLU51
ALYS59
ALYS62
ALYS227
AUMP301
AAF3302
AMG304
ANA306
AHOH401
AHOH437
AHOH485

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 304
ChainResidue
AGLU48
AGLU51
AUMP301
AAF3302
APO4303
AMG305
AHOH437

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MG A 305
ChainResidue
AGLU48
AGLU51
AGLU76
AASP79
AAF3302
AMG304
ANA306
AHOH401

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE NA A 306
ChainResidue
AGLU51
AGLU76
AAF3302
APO4303
AMG305
AHOH401
AHOH402
AHOH403
AHOH485

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PDB entries from 2025-12-24

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