4DFX

Crystal structure of myristoylated K7C catalytic subunit of cAMP-dependent protein kinase in complex with SP20 and AMP-PNP

Functional Information from GO Data

Chain	GOid	namespace	contents
E	0000287	molecular_function	magnesium ion binding
E	0001669	cellular_component	acrosomal vesicle
E	0001707	biological_process	mesoderm formation
E	0001843	biological_process	neural tube closure
E	0004672	molecular_function	protein kinase activity
E	0004674	molecular_function	protein serine/threonine kinase activity
E	0004691	molecular_function	cAMP-dependent protein kinase activity
E	0004712	molecular_function	protein serine/threonine/tyrosine kinase activity
E	0005515	molecular_function	protein binding
E	0005524	molecular_function	ATP binding
E	0005634	cellular_component	nucleus
E	0005654	cellular_component	nucleoplasm
E	0005737	cellular_component	cytoplasm
E	0005739	cellular_component	mitochondrion
E	0005811	cellular_component	lipid droplet
E	0005813	cellular_component	centrosome
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0005930	cellular_component	axoneme
E	0005952	cellular_component	cAMP-dependent protein kinase complex
E	0006338	biological_process	chromatin remodeling
E	0006397	biological_process	mRNA processing
E	0006468	biological_process	protein phosphorylation
E	0007189	biological_process	adenylate cyclase-activating G protein-coupled receptor signaling pathway
E	0007193	biological_process	adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
E	0008284	biological_process	positive regulation of cell population proliferation
E	0010898	biological_process	positive regulation of triglyceride catabolic process
E	0016020	cellular_component	membrane
E	0016607	cellular_component	nuclear speck
E	0018105	biological_process	peptidyl-serine phosphorylation
E	0018107	biological_process	peptidyl-threonine phosphorylation
E	0019870	molecular_function	potassium channel inhibitor activity
E	0019901	molecular_function	protein kinase binding
E	0019904	molecular_function	protein domain specific binding
E	0030007	biological_process	intracellular potassium ion homeostasis
E	0030145	molecular_function	manganese ion binding
E	0031267	molecular_function	small GTPase binding
E	0031514	cellular_component	motile cilium
E	0031588	cellular_component	nucleotide-activated protein kinase complex
E	0031594	cellular_component	neuromuscular junction
E	0031625	molecular_function	ubiquitin protein ligase binding
E	0031669	biological_process	cellular response to nutrient levels
E	0032991	cellular_component	protein-containing complex
E	0034237	molecular_function	protein kinase A regulatory subunit binding
E	0034605	biological_process	cellular response to heat
E	0036126	cellular_component	sperm flagellum
E	0038110	biological_process	interleukin-2-mediated signaling pathway
E	0038202	biological_process	TORC1 signaling
E	0043457	biological_process	regulation of cellular respiration
E	0044853	cellular_component	plasma membrane raft
E	0044877	molecular_function	protein-containing complex binding
E	0045542	biological_process	positive regulation of cholesterol biosynthetic process
E	0045667	biological_process	regulation of osteoblast differentiation
E	0045722	biological_process	positive regulation of gluconeogenesis
E	0045820	biological_process	negative regulation of glycolytic process
E	0045879	biological_process	negative regulation of smoothened signaling pathway
E	0046777	biological_process	protein autophosphorylation
E	0046827	biological_process	positive regulation of protein export from nucleus
E	0048240	biological_process	sperm capacitation
E	0048471	cellular_component	perinuclear region of cytoplasm
E	0048792	biological_process	spontaneous exocytosis of neurotransmitter
E	0050766	biological_process	positive regulation of phagocytosis
E	0050804	biological_process	modulation of chemical synaptic transmission
E	0051447	biological_process	negative regulation of meiotic cell cycle
E	0051726	biological_process	regulation of cell cycle
E	0051966	biological_process	regulation of synaptic transmission, glutamatergic
E	0061136	biological_process	regulation of proteasomal protein catabolic process
E	0070417	biological_process	cellular response to cold
E	0070507	biological_process	regulation of microtubule cytoskeleton organization
E	0070613	biological_process	regulation of protein processing
E	0071333	biological_process	cellular response to glucose stimulus
E	0071374	biological_process	cellular response to parathyroid hormone stimulus
E	0071377	biological_process	cellular response to glucagon stimulus
E	0097225	cellular_component	sperm midpiece
E	0097546	cellular_component	ciliary base
E	0098793	cellular_component	presynapse
E	0098794	cellular_component	postsynapse
E	0098978	cellular_component	glutamatergic synapse
E	0099170	biological_process	postsynaptic modulation of chemical synaptic transmission
E	0106310	molecular_function	protein serine kinase activity
E	0120186	biological_process	negative regulation of protein localization to chromatin
E	0140198	molecular_function	histone H1-4S35 kinase activity
E	0141156	biological_process	cAMP/PKA signal transduction
E	1904262	biological_process	negative regulation of TORC1 signaling
E	1904539	biological_process	negative regulation of glycolytic process through fructose-6-phosphate
E	1990044	biological_process	protein localization to lipid droplet
E	2000810	biological_process	regulation of bicellular tight junction assembly
I	0004862	molecular_function	cAMP-dependent protein kinase inhibitor activity
I	0006469	biological_process	negative regulation of protein kinase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE MYR E 401

Chain	Residue
E	GLY1
E	ASN2
E	ALA3
E	ALA4
E	SER14
E	PHE18
E	LEU152
E	ILE303
I	ASP24

---

site_id	AC2
Number of Residues	32
Details	BINDING SITE FOR RESIDUE ANP E 402

Chain	Residue
E	GLY52
E	VAL57
E	ALA70
E	LYS72
E	VAL104
E	MET120
E	GLU121
E	TYR122
E	VAL123
E	GLU127
E	ASP166
E	LYS168
E	GLU170
E	ASN171
E	LEU173
E	THR183
E	ASP184
E	PHE327
E	MG403
E	MG404
E	HOH520
E	HOH521
E	HOH522
E	HOH523
E	HOH526
E	HOH594
E	HOH717
E	HOH718
E	HOH753
I	ARG18
I	ALA20
I	SER21

---

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG E 403

Chain	Residue
E	ASN171
E	ASP184
E	ANP402
E	HOH520

---

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG E 404

Chain	Residue
E	ASP184
E	ANP402
E	HOH522
E	HOH526

---

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL E 405

Chain	Residue
E	ASN36
E	ALA38
E	GLN39
E	GLN42

---

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL E 406

Chain	Residue
E	ARG93
E	HOH703
I	THR5
I	THR6
I	ASP9
I	HOH121

---

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL E 407

Chain	Residue
E	PRO237
E	PHE238
E	PHE239
E	LYS249
E	HOH533
E	HOH650
E	HOH891

---

site_id	AC8
Number of Residues	72
Details	BINDING SITE FOR CHAIN I OF CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA

Chain	Residue
E	TYR330
E	GLU349
E	MYR401
E	ANP402
E	GOL406
E	HOH507
E	HOH543
E	HOH594
E	HOH683
E	HOH701
E	HOH820
E	HOH885
I	HOH101
I	HOH102
I	HOH103
I	HOH104
I	HOH106
I	HOH107
I	HOH109
I	HOH110
I	HOH111
I	HOH113
I	HOH114
I	HOH115
I	HOH117
I	HOH118
I	HOH119
I	HOH120
I	HOH121
I	HOH122
I	HOH125
I	HOH126
I	HOH127
I	HOH128
I	HOH129
I	HOH131
I	HOH133
I	HOH134
I	HOH139
E	GLY1
E	ASN2
E	ALA3
E	LEU82
E	GLN84
E	GLU86
E	LEU89
E	ARG93
E	GLU127
E	PHE129
E	ARG133
E	ASP166
E	LYS168
E	PRO169
E	GLU170
E	PHE187
E	LYS189
E	ARG190
E	VAL191
E	LYS192
E	LEU198
E	CYS199
E	GLY200
E	THR201
E	PRO202
E	GLU203
E	GLU230
E	TYR235
E	PRO236
E	PHE239
E	ALA240
E	ASP241
E	ILE246

---

Functional Information from PROSITE/UniProt

site_id	PS00107
Number of Residues	24
Details	PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGTGSFGRVMlVkhkesgnh..........YAMK

Chain	Residue	Details
E	LEU49-LYS72

---

site_id	PS00108
Number of Residues	13
Details	PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. LiYrDLKpeNLLI

Chain	Residue	Details
E	LEU162-ILE174

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Active site: {"description":"Proton acceptor"}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	18
Details	Binding site: {}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	1
Details	Modified residue: {"description":"Deamidated asparagine; partial","evidences":[{"source":"PubMed","id":"11141074","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine; by autocatalysis","evidences":[{"source":"PubMed","id":"11141074","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8395513","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P17612","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"22323819","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8395513","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	1
Details	Modified residue: {"description":"Phosphothreonine; by PDPK1","evidences":[{"source":"PubMed","id":"22323819","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"8395513","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9707564","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	1
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"21866565","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"8395513","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	1
Details	Lipidation: {"description":"N-myristoyl glycine","evidences":[{"source":"PubMed","id":"11141074","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	3
Details	Site: {"description":"Important for inhibition","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---