4D1J
The structure of the GH35 beta-galactosidase Bgl35A from Cellvibrio japonicas in complex with 1-Deoxygalactonojirimycin
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004565 | molecular_function | beta-galactosidase activity |
| A | 0005975 | biological_process | carbohydrate metabolic process |
| A | 0009341 | cellular_component | beta-galactosidase complex |
| B | 0004565 | molecular_function | beta-galactosidase activity |
| B | 0005975 | biological_process | carbohydrate metabolic process |
| B | 0009341 | cellular_component | beta-galactosidase complex |
| C | 0004565 | molecular_function | beta-galactosidase activity |
| C | 0005975 | biological_process | carbohydrate metabolic process |
| C | 0009341 | cellular_component | beta-galactosidase complex |
| D | 0004565 | molecular_function | beta-galactosidase activity |
| D | 0005975 | biological_process | carbohydrate metabolic process |
| D | 0009341 | cellular_component | beta-galactosidase complex |
| E | 0004565 | molecular_function | beta-galactosidase activity |
| E | 0005975 | biological_process | carbohydrate metabolic process |
| E | 0009341 | cellular_component | beta-galactosidase complex |
| F | 0004565 | molecular_function | beta-galactosidase activity |
| F | 0005975 | biological_process | carbohydrate metabolic process |
| F | 0009341 | cellular_component | beta-galactosidase complex |
| G | 0004565 | molecular_function | beta-galactosidase activity |
| G | 0005975 | biological_process | carbohydrate metabolic process |
| G | 0009341 | cellular_component | beta-galactosidase complex |
| H | 0004565 | molecular_function | beta-galactosidase activity |
| H | 0005975 | biological_process | carbohydrate metabolic process |
| H | 0009341 | cellular_component | beta-galactosidase complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE DGJ A 600 |
| Chain | Residue |
| A | ASN67 |
| A | HOH2029 |
| A | HOH2130 |
| A | HOH2490 |
| C | ASP550 |
| A | LYS134 |
| A | ASN135 |
| A | ASN204 |
| A | GLU205 |
| A | TYR324 |
| A | GLU349 |
| A | PHE374 |
| A | ASN383 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 601 |
| Chain | Residue |
| A | HIS49 |
| A | GLY367 |
| A | SER417 |
| A | HOH2018 |
| A | HOH2333 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA A 602 |
| Chain | Residue |
| A | ASP464 |
| A | GLY466 |
| A | SER518 |
| A | NA603 |
| A | HOH2396 |
| A | HOH2400 |
| A | HOH2431 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 603 |
| Chain | Residue |
| A | SER518 |
| A | NA602 |
| A | HOH2396 |
| A | HOH2431 |
| A | HOH2432 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 604 |
| Chain | Residue |
| A | HOH2069 |
| A | HOH2070 |
| A | HOH2491 |
| A | HOH2492 |
| A | HOH2493 |
| site_id | AC6 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE DGJ B 600 |
| Chain | Residue |
| A | PHE479 |
| A | ASP550 |
| B | ASN67 |
| B | LYS134 |
| B | ASN135 |
| B | ASN204 |
| B | GLU205 |
| B | GLU349 |
| B | PHE374 |
| B | ASN383 |
| B | HOH2031 |
| B | HOH2130 |
| B | HOH2491 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA B 601 |
| Chain | Residue |
| B | SER518 |
| B | NA602 |
| B | HOH2388 |
| B | HOH2392 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA B 602 |
| Chain | Residue |
| B | ASP464 |
| B | GLY466 |
| B | SER518 |
| B | NA601 |
| B | HOH2387 |
| B | HOH2388 |
| site_id | AC9 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE DGJ C 600 |
| Chain | Residue |
| C | ASN67 |
| C | LYS134 |
| C | ASN135 |
| C | ASN204 |
| C | GLU205 |
| C | TYR324 |
| C | GLU349 |
| C | PHE374 |
| C | ASN383 |
| C | HOH2023 |
| C | HOH2409 |
| H | ASP550 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT C 601 |
| Chain | Residue |
| C | MET410 |
| C | ARG411 |
| C | HOH2104 |
| site_id | BC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT C 602 |
| Chain | Residue |
| C | MET82 |
| C | GLU83 |
| C | ARG121 |
| C | HOH2053 |
| C | HOH2099 |
| site_id | BC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE DGJ D 600 |
| Chain | Residue |
| D | ASN67 |
| D | LYS134 |
| D | ASN135 |
| D | ASN204 |
| D | GLU205 |
| D | GLU349 |
| D | PHE374 |
| D | ASN383 |
| D | HOH2029 |
| D | HOH2147 |
| D | HOH2531 |
| E | ASP550 |
| site_id | BC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA D 601 |
| Chain | Residue |
| D | ASP464 |
| D | GLY466 |
| D | SER518 |
| D | NA603 |
| D | HOH2428 |
| D | HOH2431 |
| G | HOH2495 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA D 602 |
| Chain | Residue |
| D | HOH2520 |
| D | HOH2532 |
| D | HOH2533 |
| D | HOH2534 |
| D | HOH2488 |
| D | HOH2519 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA D 603 |
| Chain | Residue |
| D | SER518 |
| D | NA601 |
| D | HOH2428 |
| D | HOH2431 |
| D | HOH2434 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA D 604 |
| Chain | Residue |
| D | SER571 |
| D | HOH2522 |
| D | HOH2523 |
| G | HOH2474 |
| site_id | BC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT D 605 |
| Chain | Residue |
| D | ARG411 |
| D | HOH2131 |
| D | HOH2535 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT D 606 |
| Chain | Residue |
| D | GLU83 |
| D | HOH2069 |
| D | HOH2126 |
| site_id | CC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE DGJ E 600 |
| Chain | Residue |
| E | ASN67 |
| E | LYS134 |
| E | ASN135 |
| E | ASN204 |
| E | GLU205 |
| E | TYR324 |
| E | GLU349 |
| E | PHE374 |
| E | ASN383 |
| E | HOH2028 |
| E | HOH2137 |
| E | HOH2566 |
| G | ASP550 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA E 601 |
| Chain | Residue |
| E | GLU533 |
| E | GLU544 |
| E | HOH2531 |
| E | HOH2532 |
| E | HOH2536 |
| E | HOH2554 |
| site_id | CC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA E 602 |
| Chain | Residue |
| E | ASP464 |
| E | GLY466 |
| E | SER518 |
| E | GLN519 |
| E | NA604 |
| E | HOH2461 |
| E | HOH2464 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA E 603 |
| Chain | Residue |
| E | SER571 |
| E | HOH2514 |
| E | HOH2557 |
| E | HOH2559 |
| E | HOH2568 |
| site_id | CC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA E 604 |
| Chain | Residue |
| E | SER518 |
| E | GLN519 |
| E | NA602 |
| E | HOH2461 |
| E | HOH2467 |
| site_id | CC6 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE DGJ F 600 |
| Chain | Residue |
| D | ASP550 |
| F | ASN67 |
| F | LYS134 |
| F | ASN135 |
| F | ASN204 |
| F | GLU205 |
| F | GLU349 |
| F | PHE374 |
| F | ASN383 |
| F | HOH2036 |
| F | HOH2142 |
| F | HOH2564 |
| site_id | CC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA F 601 |
| Chain | Residue |
| F | HIS49 |
| F | GLY367 |
| F | SER417 |
| F | HOH2023 |
| F | HOH2356 |
| site_id | CC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA F 602 |
| Chain | Residue |
| F | SER518 |
| F | GLN519 |
| F | HOH2438 |
| F | HOH2442 |
| site_id | CC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA F 603 |
| Chain | Residue |
| F | SER571 |
| F | HOH2488 |
| F | HOH2554 |
| F | HOH2557 |
| site_id | DC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA F 604 |
| Chain | Residue |
| F | GLU533 |
| F | GLU544 |
| F | HOH2511 |
| F | HOH2512 |
| F | HOH2520 |
| F | HOH2551 |
| site_id | DC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE ACT F 605 |
| Chain | Residue |
| F | ARG411 |
| site_id | DC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE DGJ G 600 |
| Chain | Residue |
| F | PHE479 |
| F | ASP550 |
| G | ASN67 |
| G | LYS134 |
| G | ASN135 |
| G | ASN204 |
| G | GLU205 |
| G | GLU349 |
| G | PHE374 |
| G | ASN383 |
| G | HOH2038 |
| G | HOH2555 |
| site_id | DC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA G 601 |
| Chain | Residue |
| G | SER571 |
| G | HOH2545 |
| G | HOH2547 |
| G | HOH2556 |
| G | HOH2557 |
| site_id | DC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA G 602 |
| Chain | Residue |
| G | ASP464 |
| G | GLY466 |
| G | SER518 |
| G | GLN519 |
| G | NA603 |
| G | HOH2438 |
| G | HOH2439 |
| site_id | DC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA G 603 |
| Chain | Residue |
| G | SER518 |
| G | GLN519 |
| G | NA602 |
| G | HOH2439 |
| G | HOH2445 |
| G | HOH2558 |
| site_id | DC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA G 604 |
| Chain | Residue |
| G | THR488 |
| G | HOH2464 |
| G | HOH2465 |
| G | HOH2466 |
| G | HOH2467 |
| G | HOH2468 |
| G | HOH2482 |
| site_id | DC8 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE DGJ H 600 |
| Chain | Residue |
| B | ASP550 |
| H | ASN67 |
| H | LYS134 |
| H | ASN135 |
| H | ASN204 |
| H | GLU205 |
| H | GLU349 |
| H | PHE374 |
| H | ASN383 |
| H | HOH2031 |
| H | HOH2108 |
| H | HOH2393 |
| site_id | DC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA H 601 |
| Chain | Residue |
| H | ASP464 |
| H | GLY466 |
| H | SER518 |
| H | GLN519 |
| H | HOH2310 |
| H | HOH2340 |
