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4D05

Structure and activity of a minimal-type ATP-dependent DNA ligase from a psychrotolerant bacterium

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003910molecular_functionDNA ligase (ATP) activity
A0005524molecular_functionATP binding
A0006260biological_processDNA replication
A0006281biological_processDNA repair
A0006310biological_processDNA recombination
B0000166molecular_functionnucleotide binding
B0003910molecular_functionDNA ligase (ATP) activity
B0005524molecular_functionATP binding
B0006260biological_processDNA replication
B0006281biological_processDNA repair
B0006310biological_processDNA recombination
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1258
ChainResidue
AGLN70
AGLN71
APHE72
AGLU73
AHOH2090
AHOH2195
AHOH2382

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1259
ChainResidue
AARG252
AARG254
AHOH2411
AHOH2458
AGLY214
ASER215

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1256
ChainResidue
BGLN70
BGLN71
BPHE72
BGLU73
BHOH2027
BHOH2069

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1257
ChainResidue
BLYS145
BSER215
BGLY216
BPHE217
BARG222

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1260
ChainResidue
ALYS204
AHOH2405
AHOH2408
AHOH2467
BPHE211
BLYS212
BHOH2148

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1258
ChainResidue
BSER102
BTHR103
BVAL104
BHOH2180

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1261
ChainResidue
ALYS41
AARG167
ALYS173
AAMP1263
AHOH2025
AHOH2101
AHOH2341

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1259
ChainResidue
BGLN71
BARG252
BARG254
BVAL255
BHOH2064

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1262
ChainResidue
ATHR59
AALA60
AHOH2164
AHOH2166
AHOH2247
AHOH2267

site_idBC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE AMP A 1263
ChainResidue
ASER23
AGLU24
ALYS25
ALEU26
AARG30
AGLU64
APHE97
AGLU152
AMSE155
ALYS173
ASO41261
AHOH2025
AHOH2071
AHOH2078
AHOH2100
AHOH2101
AHOH2127
AHOH2469
AHOH2470

site_idBC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE AMP B 1260
ChainResidue
BSER23
BGLU24
BLYS25
BLEU26
BARG30
BGLU64
BPHE97
BILE128
BMSE155
BLYS173
BHOH2018

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1261
ChainResidue
BPHE97
BPHE106
BHIS157
BHOH2018
BHOH2181

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PDB entries from 2024-06-12

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