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4CFG

Structure of the TRIM25 coiled-coil

Functional Information from GO Data
ChainGOidnamespacecontents
A0002753biological_processcytoplasmic pattern recognition receptor signaling pathway
A0003713molecular_functiontranscription coactivator activity
A0003723molecular_functionRNA binding
A0004842molecular_functionubiquitin-protein transferase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006511biological_processubiquitin-dependent protein catabolic process
A0006513biological_processprotein monoubiquitination
A0006979biological_processresponse to oxidative stress
A0010494cellular_componentcytoplasmic stress granule
A0016567biological_processprotein ubiquitination
A0016604cellular_componentnuclear body
A0016740molecular_functiontransferase activity
A0016874molecular_functionligase activity
A0019076biological_processviral release from host cell
A0032446biological_processprotein modification by small protein conjugation
A0032880biological_processregulation of protein localization
A0033280biological_processresponse to vitamin D
A0036503biological_processERAD pathway
A0039529biological_processRIG-I signaling pathway
A0039552molecular_functionRIG-I binding
A0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
A0043627biological_processresponse to estrogen
A0044790biological_processsuppression of viral release by host
A0045087biological_processinnate immune response
A0045296molecular_functioncadherin binding
A0045893biological_processpositive regulation of DNA-templated transcription
A0046596biological_processregulation of viral entry into host cell
A0046597biological_processnegative regulation of viral entry into host cell
A0046872molecular_functionmetal ion binding
A0051091biological_processpositive regulation of DNA-binding transcription factor activity
A0051092biological_processpositive regulation of NF-kappaB transcription factor activity
A0051607biological_processdefense response to virus
A0061630molecular_functionubiquitin protein ligase activity
A0070936biological_processprotein K48-linked ubiquitination
A0140374biological_processantiviral innate immune response
A1990830biological_processcellular response to leukemia inhibitory factor
B0002753biological_processcytoplasmic pattern recognition receptor signaling pathway
B0003713molecular_functiontranscription coactivator activity
B0003723molecular_functionRNA binding
B0004842molecular_functionubiquitin-protein transferase activity
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006511biological_processubiquitin-dependent protein catabolic process
B0006513biological_processprotein monoubiquitination
B0006979biological_processresponse to oxidative stress
B0010494cellular_componentcytoplasmic stress granule
B0016567biological_processprotein ubiquitination
B0016604cellular_componentnuclear body
B0016740molecular_functiontransferase activity
B0016874molecular_functionligase activity
B0019076biological_processviral release from host cell
B0032446biological_processprotein modification by small protein conjugation
B0032880biological_processregulation of protein localization
B0033280biological_processresponse to vitamin D
B0036503biological_processERAD pathway
B0039529biological_processRIG-I signaling pathway
B0039552molecular_functionRIG-I binding
B0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
B0043627biological_processresponse to estrogen
B0044790biological_processsuppression of viral release by host
B0045087biological_processinnate immune response
B0045296molecular_functioncadherin binding
B0045893biological_processpositive regulation of DNA-templated transcription
B0046596biological_processregulation of viral entry into host cell
B0046597biological_processnegative regulation of viral entry into host cell
B0046872molecular_functionmetal ion binding
B0051091biological_processpositive regulation of DNA-binding transcription factor activity
B0051092biological_processpositive regulation of NF-kappaB transcription factor activity
B0051607biological_processdefense response to virus
B0061630molecular_functionubiquitin protein ligase activity
B0070936biological_processprotein K48-linked ubiquitination
B0140374biological_processantiviral innate immune response
B1990830biological_processcellular response to leukemia inhibitory factor
Functional Information from PROSITE/UniProt
site_idPS00518
Number of Residues10
DetailsZF_RING_1 Zinc finger RING-type signature. CgHnFCgsCL
ChainResidueDetails
ACYS28-LEU37

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues82
DetailsZN_FING: RING-type => ECO:0000255|PROSITE-ProRule:PRU00175
ChainResidueDetails
ACYS13-ARG54
BCYS13-ARG54

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0007744|PDB:5EYA, ECO:0007744|PDB:5FER
ChainResidueDetails
ACYS13
BCYS16
BCYS28
BHIS30
BCYS33
BCYS36
BCYS50
BCYS53
ACYS16
ACYS28
AHIS30
ACYS33
ACYS36
ACYS50
ACYS53
BCYS13

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ATHR91
BTHR91

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER100
BSER100

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
AGLN273
ALYS567
BGLN273
BLYS567

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:24275569
ChainResidueDetails
ATYR278
BTYR278

site_idSWS_FT_FI7
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ISG15) => ECO:0000269|PubMed:17222803
ChainResidueDetails
ALYS117
BLYS117

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PDB entries from 2024-07-24

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