4C8Q

Crystal structure of the yeast Lsm1-7-Pat1 complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000956	biological_process	nuclear-transcribed mRNA catabolic process
A	0003723	molecular_function	RNA binding
B	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
B	0000398	biological_process	mRNA splicing, via spliceosome
B	0000932	cellular_component	P-body
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005681	cellular_component	spliceosomal complex
B	0005688	cellular_component	U6 snRNP
B	0005730	cellular_component	nucleolus
B	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
B	0005737	cellular_component	cytoplasm
B	0006364	biological_process	rRNA processing
B	0006397	biological_process	mRNA processing
B	0008033	biological_process	tRNA processing
B	0008380	biological_process	RNA splicing
B	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
B	0071001	cellular_component	U4/U6 snRNP
B	0071011	cellular_component	precatalytic spliceosome
B	0071013	cellular_component	catalytic step 2 spliceosome
B	1990726	cellular_component	Lsm1-7-Pat1 complex
B	1990904	cellular_component	ribonucleoprotein complex
C	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
C	0000398	biological_process	mRNA splicing, via spliceosome
C	0000932	cellular_component	P-body
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005681	cellular_component	spliceosomal complex
C	0005688	cellular_component	U6 snRNP
C	0005730	cellular_component	nucleolus
C	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
C	0005737	cellular_component	cytoplasm
C	0006364	biological_process	rRNA processing
C	0006397	biological_process	mRNA processing
C	0008033	biological_process	tRNA processing
C	0008380	biological_process	RNA splicing
C	0033962	biological_process	P-body assembly
C	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
C	0071001	cellular_component	U4/U6 snRNP
C	0071011	cellular_component	precatalytic spliceosome
C	0071013	cellular_component	catalytic step 2 spliceosome
C	0120114	cellular_component	Sm-like protein family complex
C	1990726	cellular_component	Lsm1-7-Pat1 complex
C	1990904	cellular_component	ribonucleoprotein complex
D	0000398	biological_process	mRNA splicing, via spliceosome
D	0000956	biological_process	nuclear-transcribed mRNA catabolic process
D	0003723	molecular_function	RNA binding
D	0006396	biological_process	RNA processing
E	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
E	0000398	biological_process	mRNA splicing, via spliceosome
E	0000932	cellular_component	P-body
E	0000956	biological_process	nuclear-transcribed mRNA catabolic process
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005681	cellular_component	spliceosomal complex
E	0005688	cellular_component	U6 snRNP
E	0005730	cellular_component	nucleolus
E	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
E	0005737	cellular_component	cytoplasm
E	0006364	biological_process	rRNA processing
E	0006397	biological_process	mRNA processing
E	0008033	biological_process	tRNA processing
E	0008380	biological_process	RNA splicing
E	0022613	biological_process	ribonucleoprotein complex biogenesis
E	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
E	0071001	cellular_component	U4/U6 snRNP
E	1990726	cellular_component	Lsm1-7-Pat1 complex
E	1990904	cellular_component	ribonucleoprotein complex
F	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
F	0000398	biological_process	mRNA splicing, via spliceosome
F	0000932	cellular_component	P-body
F	0003723	molecular_function	RNA binding
F	0005515	molecular_function	protein binding
F	0005634	cellular_component	nucleus
F	0005681	cellular_component	spliceosomal complex
F	0005688	cellular_component	U6 snRNP
F	0005730	cellular_component	nucleolus
F	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
F	0005737	cellular_component	cytoplasm
F	0006364	biological_process	rRNA processing
F	0006397	biological_process	mRNA processing
F	0008033	biological_process	tRNA processing
F	0008380	biological_process	RNA splicing
F	0030490	biological_process	maturation of SSU-rRNA
F	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
F	0071001	cellular_component	U4/U6 snRNP
F	0120114	cellular_component	Sm-like protein family complex
F	1990726	cellular_component	Lsm1-7-Pat1 complex
F	1990904	cellular_component	ribonucleoprotein complex
G	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
G	0000398	biological_process	mRNA splicing, via spliceosome
G	0000932	cellular_component	P-body
G	0000956	biological_process	nuclear-transcribed mRNA catabolic process
G	0003723	molecular_function	RNA binding
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005681	cellular_component	spliceosomal complex
G	0005688	cellular_component	U6 snRNP
G	0005730	cellular_component	nucleolus
G	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
G	0005737	cellular_component	cytoplasm
G	0006364	biological_process	rRNA processing
G	0006397	biological_process	mRNA processing
G	0008033	biological_process	tRNA processing
G	0008380	biological_process	RNA splicing
G	0030490	biological_process	maturation of SSU-rRNA
G	0032991	cellular_component	protein-containing complex
G	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
G	0071001	cellular_component	U4/U6 snRNP
G	0071004	cellular_component	U2-type prespliceosome
G	0071013	cellular_component	catalytic step 2 spliceosome
G	0097526	cellular_component	spliceosomal tri-snRNP complex
G	1990726	cellular_component	Lsm1-7-Pat1 complex
G	1990904	cellular_component	ribonucleoprotein complex
H	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CO C 1080

Chain	Residue
B	GLU18
B	ARG68
C	ARG24
C	GLU46
C	ILE48
C	ARG61

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site_id	AC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CO H 1080

Chain	Residue
H	GLU701

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Functional Information from PROSITE/UniProt

site_id	PS00018
Number of Residues	13
Details	EF_HAND_1 EF-hand calcium-binding domain. DSSRSNILSspEI

Chain	Residue	Details
H	ASP647-ILE659

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0007744|PubMed:19779198

Chain	Residue	Details
H	SER456
H	SER457

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