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4C8L

Binary complex of the large fragment of DNA polymerase I from Thermus Aquaticus with the artificial base pair dNaM-d5SICS at the postinsertion site (sequence context 1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1833
ChainResidue
AARG587
AGLU615
ATYR671
AHOH2231
BLHO112
CDA203
CDG204

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 1834
ChainResidue
AARG393
AARG419

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1835
ChainResidue
AHIS639
AARG659
ALYS663
AHOH2184

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1836
ChainResidue
ASER674
AALA675
AHIS676
ATYR686

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1837
ChainResidue
AASP371
AARG431
AARG435

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1838
ChainResidue
ATRP428
APHE724
ATYR811
AHOH2064
AHOH2232
AHOH2233

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1839
ChainResidue
AARG362
AGLU465
AHIS554
AARG556
AHOH2015
AHOH2234

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1840
ChainResidue
ATYR455
AALA458
AGLU462
AARG593

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1841
ChainResidue
AHOH2128
AHOH2129
BDC109
BDG110

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 1113
ChainResidue
BHOH2006
BHOH2008
BHOH2025
BHOH2026
BHOH2027

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 1216
ChainResidue
BDC106
BHOH2006
BHOH2025
CDC209
CDC210
CHOH2011

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

225946

PDB entries from 2024-10-09

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