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4C7O

The structural basis of FtsY recruitment and GTPase activation by SRP RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0006614biological_processSRP-dependent cotranslational protein targeting to membrane
A0048500cellular_componentsignal recognition particle
B0005525molecular_functionGTP binding
B0006614biological_processSRP-dependent cotranslational protein targeting to membrane
C0003924molecular_functionGTPase activity
C0005525molecular_functionGTP binding
C0006614biological_processSRP-dependent cotranslational protein targeting to membrane
C0048500cellular_componentsignal recognition particle
D0005525molecular_functionGTP binding
D0006614biological_processSRP-dependent cotranslational protein targeting to membrane
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ALF A 1001
ChainResidue
AGLN109
AHOH1004
AHOH1005
AHOH1006
AHOH1007
BGDP1003
AGLY110
ALYS113
AASP138
AARG141
ATHR191
AGLY193
AMG1002
AGDP1003

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1002
ChainResidue
ATHR114
AALF1001
AGDP1003
AHOH1005
AHOH1006
AHOH1007

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE GDP A 1003
ChainResidue
AGLY110
AALA111
AGLY112
ALYS113
ATHR114
ATHR115
ALYS119
AARG141
AGLN147
ALYS249
AASP251
AGLY274
AVAL275
AGLY276
AGLU277
AALF1001
AMG1002
AHOH1005
AHOH2066
BASN108
BGLY109
BARG139
BLEU193
BALF1001

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ALF B 1001
ChainResidue
AGDP1003
AHOH2039
BASN108
BGLY109
BLYS112
BASP136
BARG139
BALA190
BGLY191
BMG1002
BGDP1003
BHOH1004
BHOH1005
BHOH1006
BHOH1007

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1002
ChainResidue
BTHR113
BASP188
BALF1001
BGDP1003
BHOH1005
BHOH1006
BHOH1007

site_idAC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE GDP B 1003
ChainResidue
AGLN109
AARG141
ALEU195
AALF1001
AHOH2017
BGLY109
BVAL110
BGLY111
BLYS112
BTHR113
BTHR114
BGLN145
BLYS253
BASP255
BGLY278
BVAL279
BGLY280
BGLU281
BALF1001
BMG1002
BHOH1005
BHOH1006
BHOH2021
BHOH2077

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ALF C 1001
ChainResidue
CGDP1003
CHOH1004
CHOH1005
CHOH1006
CHOH2068
DGDP1003
CLEU108
CGLN109
CGLY110
CLYS113
CASP138
CARG141
CTHR191
CGLY193
CMG1002

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 1002
ChainResidue
CTHR114
CALF1001
CGDP1003
CHOH1005
CHOH1006
CHOH1007

site_idAC9
Number of Residues26
DetailsBINDING SITE FOR RESIDUE GDP C 1003
ChainResidue
CGLY110
CALA111
CGLY112
CLYS113
CTHR114
CTHR115
CLYS119
CARG141
CGLN147
CLYS249
CASP251
CGLY274
CVAL275
CGLY276
CGLU277
CALF1001
CMG1002
CHOH1005
CHOH1006
CHOH2055
CHOH2068
CHOH2124
DASN108
DARG139
DLEU193
DALF1001

site_idBC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ALF D 1001
ChainResidue
CGDP1003
CHOH2070
CHOH2071
DASN108
DGLY109
DLYS112
DASP136
DARG139
DGLY191
DMG1002
DGDP1003
DHOH1004
DHOH1005
DHOH1006
DHOH1007

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 1002
ChainResidue
DTHR113
DALF1001
DGDP1003
DHOH1005
DHOH1006
DHOH1007

site_idBC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE GDP D 1003
ChainResidue
CGLN109
CALF1001
DGLY109
DVAL110
DGLY111
DLYS112
DTHR113
DTHR114
DLYS118
DGLN145
DLYS253
DASP255
DGLY278
DVAL279
DGLY280
DGLU281
DALF1001
DMG1002
DHOH1005
DHOH1006
DHOH2058
DHOH2060

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GDP D 1306
ChainResidue
CGLU277
CLYS278
CHOH2122
DPHE138
DALA190
DGLY191
DLEU199
DGLU202
DHOH2100

Functional Information from PROSITE/UniProt
site_idPS00300
Number of Residues14
DetailsSRP54 SRP54-type proteins GTP-binding domain signature. PIkFLGVGEkTeaL
ChainResidueDetails
APRO269-LEU282
BPRO273-LEU286

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00306","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues28
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00920","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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