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4C2Z

Human N-myristoyltransferase (NMT1) with Myristoyl-CoA and inhibitor bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
Functional Information from PDB Data
site_idAC1
Number of Residues34
DetailsBINDING SITE FOR RESIDUE MYA B 1497
ChainResidue
BARG115
BPHE247
BLEU248
BCYS249
BVAL250
BARG255
BSER256
BARG258
BVAL259
BALA260
BPRO261
BTYR117
BTHR268
BTYR281
BTHR282
BLEU287
BTYR479
B6461498
BMG1499
BHOH2127
BHOH2128
BHOH2246
BGLN118
BHOH2247
BHOH2248
BHOH2249
BHOH2250
BHOH2251
BPHE119
BTRP120
BTYR180
BVAL181
BILE245
BASN246

site_idAC2
Number of Residues35
DetailsBINDING SITE FOR RESIDUE MYA A 1497
ChainResidue
ATYR117
AGLN118
APHE119
ATRP120
ATYR180
AVAL181
AILE245
AASN246
APHE247
ALEU248
ACYS249
AVAL250
AARG255
ASER256
ALYS257
AARG258
AVAL259
AALA260
APRO261
ATHR268
AVAL271
APHE277
ATYR281
ATHR282
ALEU287
ATYR479
AMG1499
AHOH2003
AHOH2163
AHOH2272
AHOH2273
AHOH2274
AHOH2275
AHOH2276
AHOH2278

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 646 A 1498
ChainResidue
ATYR180
AVAL181
AASP183
APHE188
APHE190
AASN246
ATHR282
AGLY284
ATYR296
AHIS298
APHE311
ASER405
ATYR420
AASP471
AGLN496
AHOH2087
AHOH2176

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 646 B 1498
ChainResidue
BASP471
BGLN496
BMYA1497
BHOH2139
BHOH2140
BGLU182
BASP183
BASP184
BPHE188
BPHE190
BASN246
BTHR282
BGLY284
BTYR296
BHIS298
BPHE311
BSER405
BTYR420

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 1499
ChainResidue
ALEU254
AARG255
ASER256
ALYS257
AARG258
AVAL259
AMYA1497

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1499
ChainResidue
BLEU254
BSER256
BLYS257
BARG258
BVAL259
BMYA1497

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE CIT A 1500
ChainResidue
ATHR122
AGLN123
APRO124
AGLU139
ALYS142
AARG265
AASN389
AALA390
AHOH2018
AHOH2279
AHOH2280
AHOH2281
AHOH2283

site_idAC8
Number of Residues11
DetailsBINDING SITE FOR RESIDUE CIT B 1500
ChainResidue
BTHR122
BGLN123
BGLU139
BLYS142
BARG265
BASN389
BALA390
BHOH2131
BHOH2161
BHOH2206
BHOH2252

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1501
ChainResidue
ALYS289
AVAL291
ALEU478
ATRP481
ALYS482
ACYS483
ASER485

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1501
ChainResidue
BGLU244
BPRO364
BMET366
BTRP374
BTYR423
BVAL494
BGLN496
BHOH2254

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1502
ChainResidue
AGLU244
AMET366
ATRP374
APHE422
ATYR423
AVAL494
AGLN496
AHOH2156

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 1502
ChainResidue
BPRO126
BLYS289
BVAL291
BTYR477
BLEU478
BTRP481
BLYS482
BCYS483
BHOH2137

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1503
ChainResidue
BSER300
BPRO303
BSER312

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 1503
ChainResidue
ASER300
APRO303
ASER312

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1504
ChainResidue
AGLN118
AARG258

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 1504
ChainResidue
BGLN118
BARG258

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1505
ChainResidue
AVAL132
ASER485

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 1505
ChainResidue
BVAL132
BLYS289
BSER485

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 1506
ChainResidue
BASP237
BTHR238

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 1507
ChainResidue
BARG215
BARG220

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EINFLCvHK
ChainResidueDetails
AGLU244-LYS252

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGiGDG
ChainResidueDetails
ALYS466-GLY472

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
AGLN118
AARG258
AVAL259
AALA260
BGLN118
BARG258
BVAL259
BALA260

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|PubMed:32103017, ECO:0000269|PubMed:32111831, ECO:0000269|Ref.19
ChainResidueDetails
APHE119
ATRP120
ALEU248
AVAL250
ASER256
BPHE119
BTRP120
BLEU248
BVAL250
BSER256

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32103017
ChainResidueDetails
APHE247
BPHE247

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25255805, ECO:0000269|Ref.19
ChainResidueDetails
ACYS249
BCYS249

220472

PDB entries from 2024-05-29

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