4C0B
Structure of wild-type Clp1p-Pcf11p (454 -563) complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005849 | cellular_component | mRNA cleavage factor complex |
| A | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
| A | 0006396 | biological_process | RNA processing |
| A | 0006397 | biological_process | mRNA processing |
| A | 0031124 | biological_process | mRNA 3'-end processing |
| A | 0051731 | molecular_function | polynucleotide 5'-hydroxyl-kinase activity |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005849 | cellular_component | mRNA cleavage factor complex |
| B | 0006388 | biological_process | tRNA splicing, via endonucleolytic cleavage and ligation |
| B | 0006396 | biological_process | RNA processing |
| B | 0006397 | biological_process | mRNA processing |
| B | 0031124 | biological_process | mRNA 3'-end processing |
| B | 0051731 | molecular_function | polynucleotide 5'-hydroxyl-kinase activity |
| C | 0005849 | cellular_component | mRNA cleavage factor complex |
| C | 0006369 | biological_process | termination of RNA polymerase II transcription |
| C | 0031124 | biological_process | mRNA 3'-end processing |
| D | 0005849 | cellular_component | mRNA cleavage factor complex |
| D | 0006369 | biological_process | termination of RNA polymerase II transcription |
| D | 0031124 | biological_process | mRNA 3'-end processing |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 18 |
| Details | BINDING SITE FOR RESIDUE ATP A 1446 |
| Chain | Residue |
| A | ASP33 |
| A | LYS136 |
| A | THR137 |
| A | SER138 |
| A | ASP311 |
| A | GLY312 |
| A | VAL313 |
| A | SER314 |
| A | TYR320 |
| A | MG1447 |
| A | PHE56 |
| A | LYS72 |
| A | PRO74 |
| A | GLY131 |
| A | SER132 |
| A | GLN133 |
| A | THR134 |
| A | GLY135 |
| site_id | AC2 |
| Number of Residues | 19 |
| Details | BINDING SITE FOR RESIDUE ATP B 1447 |
| Chain | Residue |
| B | ASP33 |
| B | GLN35 |
| B | PHE56 |
| B | LYS72 |
| B | PHE73 |
| B | PRO74 |
| B | SER132 |
| B | GLN133 |
| B | THR134 |
| B | GLY135 |
| B | LYS136 |
| B | THR137 |
| B | SER138 |
| B | SER254 |
| B | ASP311 |
| B | GLY312 |
| B | VAL313 |
| B | SER314 |
| B | MG1448 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MG A 1447 |
| Chain | Residue |
| A | THR137 |
| A | ATP1446 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MG B 1448 |
| Chain | Residue |
| B | THR137 |
| B | ATP1447 |
Functional Information from PROSITE/UniProt
| site_id | PS00430 |
| Number of Residues | 100 |
| Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. maslpgidehttseelitgdnewhklvipkgsdwqidlkaegklivkvnsgiveifgtelavddeytfqnwkfpiyaveetellwkcpdltt.......................NTITVKPN |
| Chain | Residue | Details |
| A | MET1-ASN100 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03035, ECO:0000269|PubMed:17151076 |
| Chain | Residue | Details |
| A | GLN133 | |
| B | ASP33 | |
| B | LYS72 | |
| B | GLN133 | |
| A | ASP33 | |
| A | LYS72 |
