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4BCD

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A NON-COVALENTLY BOUND P2-substituted N-acyl-prolylpyrrolidine inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006508biological_processproteolysis
A0008236molecular_functionserine-type peptidase activity
A0070012molecular_functionoligopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE TDV A 791
ChainResidue
APHE173
AVAL644
AGLY254
APHE476
AILE478
ASER554
AVAL580
AILE591
ATRP595
AARG643

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE TAM A 1711
ChainResidue
AILE118
ALEU119
ASER120
AASP121
ALYS445
AASP446
AASN522
AASN525
AHOH2118
AHOH2291
AHOH2757
AHOH2814
AHOH2956

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1712
ChainResidue
ALYS48
AGLU323
ASER324
ATRP326
AHOH2623
AHOH2640

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1713
ChainResidue
AALA226
AGLU227
APHE228
AILE276
ALYS281
AHOH2957
AHOH2958

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 1714
ChainResidue
AGLY553
AHIS680
AHOH2959

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1715
ChainResidue
APRO568
AASP569
APHE571
AILE628
AGLN629
APRO631
AASN668
AHOH2831
AHOH2917

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1716
ChainResidue
AGLU239
AASP291
ATYR292
AHOH2511
AHOH2518
AHOH2532
AHOH2593
AHOH2594
AHOH2596

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1717
ChainResidue
AVAL341
AHOH2594
AHOH2595
AHOH2596
AHOH2961

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1718
ChainResidue
AASP8
AVAL9
ATRP30
AGLN38
AALA41
APHE42
AHOH2033
AHOH2417
AHOH2963

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1719
ChainResidue
AGLU287
AASN305
AGLU512
ALYS516
AHOH2545
AHOH2584
AHOH2608
AHOH2609

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1720
ChainResidue
AGLN193
ATHR204
AASN205
ALEU206

Functional Information from PROSITE/UniProt
site_idPS00708
Number of Residues31
DetailsPRO_ENDOPEP_SER Prolyl endopeptidase family serine active site. DfqcAaeyLikegytspkrltinGgSnGGLL
ChainResidueDetails
AASP529-LEU559

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU10084, ECO:0000269|PubMed:1900195
ChainResidueDetails
ASER554

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Charge relay system
ChainResidueDetails
AASP641

site_idSWS_FT_FI3
Number of Residues1
DetailsACT_SITE: Charge relay system => ECO:0000255|PROSITE-ProRule:PRU10084, ECO:0000269|PubMed:2064618
ChainResidueDetails
AHIS680

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0000250|UniProtKB:P48147
ChainResidueDetails
AMET1

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P48147
ChainResidueDetails
ALYS157

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 901
ChainResidueDetails
ATYR473electrostatic stabiliser
ASER554covalent catalysis, proton shuttle (general acid/base)
AASP641electrostatic stabiliser, modifies pKa
AHIS680proton shuttle (general acid/base)

221716

PDB entries from 2024-06-26

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