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4BA1

Archaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000177cellular_componentcytoplasmic exosome (RNase complex)
A0000178cellular_componentexosome (RNase complex)
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006401biological_processRNA catabolic process
A0016075biological_processrRNA catabolic process
A0035925molecular_functionmRNA 3'-UTR AU-rich region binding
B0000175molecular_function3'-5'-RNA exonuclease activity
B0000177cellular_componentcytoplasmic exosome (RNase complex)
B0000178cellular_componentexosome (RNase complex)
B0003723molecular_functionRNA binding
B0004527molecular_functionexonuclease activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006401biological_processRNA catabolic process
B0016075biological_processrRNA catabolic process
B0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
I0000178cellular_componentexosome (RNase complex)
I0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
I0003676molecular_functionnucleic acid binding
I0003723molecular_functionRNA binding
I0005737cellular_componentcytoplasm
I0006401biological_processRNA catabolic process
I0008143molecular_functionpoly(A) binding
I0034475biological_processU4 snRNA 3'-end processing
I0071034biological_processCUT catabolic process
I0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE A 1276
ChainResidue
ATHR43
ALEU55
ALYS57
AHOH2242
BVAL37

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A 1277
ChainResidue
APRO39
ASER41
ALYS57
AGLY59

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 B 301
ChainResidue
BARG99
BGLY137
BSER138
BARG139
BHOH2100
BHOH2104

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 B 302
ChainResidue
AARG112
AHOH2094
BARG98
BHOH2084
BHOH2158
BHOH2159
BHOH2160

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 401
ChainResidue
AHIS0
ASER2
AGLU105
BILE101
BSER104

227344

PDB entries from 2024-11-13

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