4B2O

Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004113	molecular_function	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
A	0005737	cellular_component	cytoplasm
A	0008663	molecular_function	2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
A	0016787	molecular_function	hydrolase activity
A	0046872	molecular_function	metal ion binding
B	0004113	molecular_function	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
B	0005737	cellular_component	cytoplasm
B	0008663	molecular_function	2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
B	0016787	molecular_function	hydrolase activity
B	0046872	molecular_function	metal ion binding
C	0004113	molecular_function	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
C	0005737	cellular_component	cytoplasm
C	0008663	molecular_function	2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
C	0016787	molecular_function	hydrolase activity
C	0046872	molecular_function	metal ion binding
D	0004113	molecular_function	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
D	0005737	cellular_component	cytoplasm
D	0008663	molecular_function	2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
D	0016787	molecular_function	hydrolase activity
D	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	BINDING SITE FOR RESIDUE PO4 A 1265

Chain	Residue
A	GLU39
A	HOH2422
A	HOH2423
A	ASN40
A	ASN67
A	HIS68
A	HIS175
A	HIS177
A	FE21266
A	FE21267
A	HOH2010

---

site_id	AC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 A 1266

Chain	Residue
A	ASP8
A	GLU39
A	ASN40
A	HIS177
A	PO41265
A	FE21267
A	HOH2010

---

site_id	AC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 A 1267

Chain	Residue
A	GLU39
A	ASN67
A	HIS150
A	HIS175
A	PO41265
A	FE21266
A	HOH2010

---

site_id	AC4
Number of Residues	13
Details	BINDING SITE FOR RESIDUE PO4 B 1265

Chain	Residue
B	GLU39
B	ASN40
B	ASN67
B	HIS68
B	HIS175
B	HIS177
B	FE21266
B	FE21267
B	HOH2008
B	HOH2135
B	HOH2262
B	HOH2267
B	HOH2362

---

site_id	AC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 B 1266

Chain	Residue
B	ASP8
B	GLU39
B	ASN40
B	HIS177
B	PO41265
B	FE21267
B	HOH2008

---

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 B 1267

Chain	Residue
B	GLU39
B	ASN67
B	HIS150
B	HIS175
B	PO41265
B	FE21266
B	HOH2008

---

site_id	AC7
Number of Residues	10
Details	BINDING SITE FOR RESIDUE PO4 C 1265

Chain	Residue
C	GLU39
C	ASN40
C	ASN67
C	HIS68
C	HIS175
C	HIS177
C	FE21266
C	FE21267
C	HOH2008
C	HOH2245

---

site_id	AC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 C 1266

Chain	Residue
C	GLU39
C	ASN67
C	HIS150
C	HIS175
C	PO41265
C	FE21267
C	HOH2008

---

site_id	AC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 C 1267

Chain	Residue
C	ASP8
C	GLU39
C	ASN40
C	HIS177
C	PO41265
C	FE21266
C	HOH2008

---

site_id	BC1
Number of Residues	10
Details	BINDING SITE FOR RESIDUE PO4 D 1265

Chain	Residue
D	GLU39
D	ASN40
D	ASN67
D	HIS68
D	HIS175
D	HIS177
D	FE21266
D	FE21267
D	HOH2005
D	HOH2097

---

site_id	BC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 D 1266

Chain	Residue
D	GLU39
D	ASN67
D	HIS150
D	HIS175
D	PO41265
D	FE21267
D	HOH2005

---

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE FE2 D 1267

Chain	Residue
D	HOH2005
D	ASP8
D	GLU39
D	ASN40
D	HIS177
D	PO41265
D	FE21266

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Active site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"24163345","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	28
Details	Binding site: {"evidences":[{"source":"PubMed","id":"24163345","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4B2O","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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