Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4B2O

Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyCCD
Collection date2011-02-27
DetectorADSC CCD
Spacegroup nameP 1 21 1
Unit cell lengths73.855, 105.997, 77.920
Unit cell angles90.00, 108.30, 90.00
Refinement procedure
Resolution19.738 - 1.640
R-factor0.1603
Rwork0.159
R-free0.18540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1t70
RMSD bond length0.015
RMSD bond angle1.096
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((PHENIX.REFINE))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]19.7401.730
High resolution limit [Å]1.6401.640
Rmerge0.0600.480
Number of reflections134017
<I/σ(I)>14.41.9
Completeness [%]96.479.6
Redundancy3.62.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
10.2 M SODIUM ACETATE, 20% PEG 3350

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon