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4AUK

Crystal structure of C2498 2'-O-ribose methyltransferase RlmM from Escherichia coli

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
A0016740molecular_functiontransferase activity
A0031167biological_processrRNA methylation
A0032259biological_processmethylation
A0070677molecular_functionrRNA (cytosine-2'-O-)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0008168molecular_functionmethyltransferase activity
B0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
B0016740molecular_functiontransferase activity
B0031167biological_processrRNA methylation
B0032259biological_processmethylation
B0070677molecular_functionrRNA (cytosine-2'-O-)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1358
ChainResidue
AARG34
AVAL35
ALYS36
ATYR41
AVAL42
AILE43
AHOH2326

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1359
ChainResidue
ATYR313
ASER317
AHIS318
AEDO1367
AHOH2023
AHOH2327
BGLU28
AASP22
AGLN26

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 1360
ChainResidue
AVAL96
APRO146
ATYR162
ATYR164
AMET309
AGLU346
AEDO1374
AHOH2287
AHOH2320
AHOH2321

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1361
ChainResidue
ALYS99
AALA138
AASN139
ATYR140
AARG345
AHOH2154
AHOH2319

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE TRS A 1362
ChainResidue
ALYS14
AALA18
AARG312
ATYR313
AGLU314
AHOH2017
AHOH2289
AHOH2328
BTYR47
BGLN48

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE TLA A 1363
ChainResidue
AILE332
AASN333
AARG354
AILE355
ATRP356
AHOH2308
BTRP214
BTYR237
BHOH2164

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 1364
ChainResidue
AARG57
ATYR164
AASN166
AASN167
AHOH2168

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 1365
ChainResidue
AASN241
AARG258
AGLU259
AASP260
ALYS263

site_idAC9
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PGE A 1366
ChainResidue
ALYS23
ALEU59
ASER62
ASER63
AILE65
AGLN337
AALA338
AEDO1367
AEDO1368
AHOH2026
AHOH2029
AHOH2311
AHOH2331
AHOH2333

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1367
ChainResidue
ALYS23
AGLN26
AGOL1359
APGE1366
AHOH2027

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 1368
ChainResidue
ASER62
ALEU64
APHE199
AGLN337
AALA338
AARG339
APGE1366
AHOH2313
AHOH2314

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 1369
ChainResidue
AGLY11
AGLU13
ALYS14
AGLU15
AGLU37
AARG312
AHOH2013
AHOH2016
AHOH2053

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1370
ChainResidue
ASER247
ALEU248
AHOH2183
AHOH2220

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1371
ChainResidue
AASP109
AARG177
ATYR342

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1372
ChainResidue
APHE171
ATYR172
AILE175
AARG177
AHOH2172
AHOH2176

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1373
ChainResidue
AGLY219
ACSS221
AASP240
AHOH2231
AHOH2334

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1374
ChainResidue
AGLY11
APHE12
AARG312
AGOL1360
AHOH2013
AHOH2287
AHOH2322
AHOH2335

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1375
ChainResidue
APRO282
AALA283
AGLU315
AASN319
AHOH2336

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1376
ChainResidue
ALYS122
APHE264
ATHR267
AHOH2253

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1377
ChainResidue
ALEU103
AARG104
AVAL105
ATHR124
AHOH2110
AHOH2111
AHOH2140
AHOH2145

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1356
ChainResidue
BARG34
BVAL35
BLYS36
BTYR41
BVAL42
BILE43

site_idCC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 1357
ChainResidue
BSER62
BSER63
BLEU320
BILE336
BGLN337
BALA338
BHOH2024
BHOH2209
BHOH2214
BHOH2215

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1358
ChainResidue
BLYS99
BALA138
BASN139
BTYR140

site_idCC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1359
ChainResidue
AGLU28
AHOH2028
AHOH2035
BASP22
BGLN26
BGLU314
BSER317
BEDO1361

site_idCC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 1360
ChainResidue
AASP22
AGLY25
AGLN26
AHOH2021
BASP22
BGLY25
BGLN26
BHOH2020

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 1361
ChainResidue
BLYS23
BGLN26
BSER317
BGOL1359
BEDO1365
BHOH2025
BHOH2216

site_idCC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 1362
ChainResidue
BARG57
BASN166

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 1363
ChainResidue
BVAL96
BTYR164
BMET309
BHOH2213

site_idDC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 1364
ChainResidue
BGLY11
BPHE12
BGLU13
BLYS14
BGLU15
BGLU37
BASN38
BHOH2017

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 1365
ChainResidue
BLEU59
BSER63
BEDO1361
BHOH2023
BHOH2024
BHOH2027

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:22923526
ChainResidueDetails
ALYS306
BLYS306

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:22923526
ChainResidueDetails
ASER188
AASP240
AASP260
AASP277
BSER188
BASP240
BASP260
BASP277

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING:
ChainResidueDetails
ACSS221
BCSS221

218853

PDB entries from 2024-04-24

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