4A1J
Ykud L,D-transpeptidase from B.subtilis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008360 | biological_process | regulation of cell shape |
| A | 0009252 | biological_process | peptidoglycan biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016757 | molecular_function | glycosyltransferase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| A | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| A | 0031160 | cellular_component | spore wall |
| A | 0071555 | biological_process | cell wall organization |
| A | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
| B | 0008360 | biological_process | regulation of cell shape |
| B | 0009252 | biological_process | peptidoglycan biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016757 | molecular_function | glycosyltransferase activity |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0018104 | biological_process | peptidoglycan-protein cross-linking |
| B | 0030435 | biological_process | sporulation resulting in formation of a cellular spore |
| B | 0031160 | cellular_component | spore wall |
| B | 0071555 | biological_process | cell wall organization |
| B | 0071972 | molecular_function | peptidoglycan L,D-transpeptidase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1165 |
| Chain | Residue |
| A | HIS123 |
| A | SER136 |
| A | LYS137 |
| A | GLY138 |
| A | CYS139 |
| A | ARG141 |
| B | LYS137 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1166 |
| Chain | Residue |
| A | ARG141 |
| A | ASN127 |
| A | VAL135 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1165 |
| Chain | Residue |
| A | THR11 |
| A | ASN13 |
| B | ARG102 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1166 |
| Chain | Residue |
| A | LYS137 |
| B | HIS123 |
| B | SER136 |
| B | LYS137 |
| B | GLY138 |
| B | CYS139 |
| B | ARG141 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1167 |
| Chain | Residue |
| A | LYS85 |
| A | LYS137 |
| B | ASN127 |
| B | VAL135 |
| B | ARG141 |
| B | HOH2070 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1168 |
| Chain | Residue |
| B | THR11 |
| B | ASN13 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 86 |
| Details | Domain: {"description":"LysM","evidences":[{"source":"PROSITE-ProRule","id":"PRU01118","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 214 |
| Details | Domain: {"description":"L,D-TPase catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU01373","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton donor/acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU01373","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU01373","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
