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3ZVM

The structural basis for substrate recognition by mammalian polynucleotide kinase 3' phosphatase

Functional Information from GO Data
ChainGOidnamespacecontents
A0006281biological_processDNA repair
A0046403molecular_functionpolynucleotide 3'-phosphatase activity
A0046404molecular_functionATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
B0006281biological_processDNA repair
B0046403molecular_functionpolynucleotide 3'-phosphatase activity
B0046404molecular_functionATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP A 1523
ChainResidue
APHE372
AARG463
APHE502
AARG503
ALEU504
AGLN505
AMG1526
AHOH2420
AHOH2424
AHOH2426
AHOH2460
AGLY374
AHOH2551
AHOH2625
AHOH2626
AALA375
AGLY376
ALYS377
ASER378
ATHR379
AASN459
APHE462

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE EPE A 1524
ChainResidue
APRO373
AARG395
AASP396
ATRP401
AASN422
AHIS470
AHOH2454
AHOH2457
AHOH2458
AHOH2460
AHOH2490
AHOH2498
AHOH2499
AHOH2629

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1525
ChainResidue
AASP170
AASP172
AASP288
AHOH2047
AHOH2050
EDC2

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1526
ChainResidue
ASER378
AASP396
AADP1523
AHOH2423
AHOH2424
AHOH2460

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1527
ChainResidue
AGLU197
ALEU328
AHOH2088
AHOH2089

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 1528
ChainResidue
AALA254
AGLY255
AARG258
ALYS259
APRO260
AVAL261
AMET465
ASER520
AHOH2207
AHOH2539
AHOH2630

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1529
ChainResidue
AARG179
ASER189
ATRP191
ALYS241
AHOH2064
AHOH2632

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 1530
ChainResidue
AGLY159
AVAL160
ALYS161
AGLN163
ATYR210
ALYS211
ALEU212
AHOH2125
AHOH2184

site_idAC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP B 1523
ChainResidue
BGLY374
BALA375
BGLY376
BLYS377
BSER378
BTHR379
BASN459
BPHE462
BARG463
BPHE502
BARG503
BGLN505
BHIS507
BTYR516
BMG1526
BHOH2372
BHOH2374
BHOH2376
BHOH2395
BHOH2468
BHOH2545

site_idBC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE EPE B 1524
ChainResidue
BARG395
BASP396
BTRP401
BASN422
BHIS470
BHOH2144
BHOH2373
BHOH2392
BHOH2394
BHOH2395
BHOH2396
BHOH2402
BHOH2418
BHOH2424
BHOH2425
BHOH2458
BHOH2547

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 1525
ChainResidue
BASP170
BASP172
BASP288
BHOH2032
BHOH2034
BHOH2035
FDC2

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1526
ChainResidue
BSER378
BASP396
BADP1523
BHOH2374
BHOH2375
BHOH2395

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1527
ChainResidue
BPRO338
BPHE340
BHIS458
BARG461
BPHE519
BSER520
BGLU521

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1528
ChainResidue
BPRO188
BTRP191
BLYS234
BALA237
BHOH2058
BHOH2116
BHOH2121

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1529
ChainResidue
ALYS438
AGLY441
BARG179
BSER189
BTRP191
BHOH2549

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1530
ChainResidue
BALA297
BPRO298
BTRP330
BHOH2229
BHOH2231
BHOH2550
BHOH2551

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT B 1531
ChainResidue
BLYS150
BASN257
BHIS267
BHOH2159
BHOH2178

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 1532
ChainResidue
BARG432
BCYS436
BHOH2431
BHOH2518

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY371
BGLY371

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q96T60
ChainResidueDetails
ASER114
BSER114

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17525332
ChainResidueDetails
ATHR122
BTHR122

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PDB entries from 2024-07-31

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