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3ZTP

Orthorhombic crystal form P21212 of the Aquifex aeolicus nucleoside diphosphate kinase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006163biological_processpurine nucleotide metabolic process
A0006183biological_processGTP biosynthetic process
A0006220biological_processpyrimidine nucleotide metabolic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0009117biological_processnucleotide metabolic process
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006163biological_processpurine nucleotide metabolic process
C0006183biological_processGTP biosynthetic process
C0006220biological_processpyrimidine nucleotide metabolic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0009117biological_processnucleotide metabolic process
C0016301molecular_functionkinase activity
C0016740molecular_functiontransferase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 500
ChainResidue
APHE50
ATYR51
ATYR52
AVAL53
AHIS54
ASER127
AGLU131
AHOH2115
AHOH2190

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 510
ChainResidue
ALYS11
ATYR51
AARG107
AHIS120
AHOH2029
AHOH2114
AHOH2115
AHOH2156
AHOH2191

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 C 510
ChainResidue
CLYS11
CTYR51
CLEU63
CHIS120
CHOH2021
CHOH2139
CHOH2150
CHOH2165

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NaiHASDSP
ChainResidueDetails
AASN117-PRO125

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Pros-phosphohistidine intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_00451","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00451","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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