3ZEU
Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer bound to ATPgammaS
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| A | 0005829 | cellular_component | cytosol |
| B | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| B | 0005506 | molecular_function | iron ion binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006400 | biological_process | tRNA modification |
| B | 0008033 | biological_process | tRNA processing |
| B | 0016746 | molecular_function | acyltransferase activity |
| B | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0061711 | molecular_function | N(6)-L-threonylcarbamoyladenine synthase activity |
| B | 0070525 | biological_process | tRNA threonylcarbamoyladenosine metabolic process |
| D | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| D | 0005829 | cellular_component | cytosol |
| E | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| E | 0005506 | molecular_function | iron ion binding |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0006400 | biological_process | tRNA modification |
| E | 0008033 | biological_process | tRNA processing |
| E | 0016746 | molecular_function | acyltransferase activity |
| E | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
| E | 0046872 | molecular_function | metal ion binding |
| E | 0061711 | molecular_function | N(6)-L-threonylcarbamoyladenine synthase activity |
| E | 0070525 | biological_process | tRNA threonylcarbamoyladenosine metabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 1231 |
| Chain | Residue |
| A | ALA108 |
| A | THR109 |
| A | ARG110 |
| A | HOH2089 |
| A | HOH2129 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1338 |
| Chain | Residue |
| B | ARG326 |
| B | PRO327 |
| B | ARG328 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 1339 |
| Chain | Residue |
| B | HIS115 |
| B | ASP300 |
| B | AGS1342 |
| B | HIS111 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 1340 |
| Chain | Residue |
| B | ASP11 |
| B | GLU12 |
| B | HOH2015 |
| B | HOH2016 |
| B | HOH2017 |
| B | HOH2020 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 1341 |
| Chain | Residue |
| A | TRP224 |
| B | PRO44 |
| B | GLU45 |
| site_id | AC6 |
| Number of Residues | 29 |
| Details | BINDING SITE FOR RESIDUE AGS B 1342 |
| Chain | Residue |
| B | HIS111 |
| B | MET112 |
| B | HIS115 |
| B | SER136 |
| B | GLY137 |
| B | GLY138 |
| B | HIS139 |
| B | GLY163 |
| B | PHE166 |
| B | ASP167 |
| B | GLY180 |
| B | PRO181 |
| B | GLY268 |
| B | VAL269 |
| B | ASN272 |
| B | CYS298 |
| B | THR299 |
| B | ASP300 |
| B | ZN1339 |
| B | HOH2009 |
| B | HOH2011 |
| B | HOH2015 |
| B | HOH2020 |
| B | HOH2099 |
| B | HOH2168 |
| B | HOH2261 |
| B | HOH2262 |
| B | HOH2263 |
| B | HOH2264 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL E 1338 |
| Chain | Residue |
| D | TRP224 |
| E | PRO44 |
| E | GLU45 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN E 1339 |
| Chain | Residue |
| E | HIS111 |
| E | HIS115 |
| E | ASP300 |
| E | AGS1341 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG E 1340 |
| Chain | Residue |
| E | ASP11 |
| E | GLU12 |
| E | HOH2014 |
| E | HOH2015 |
| E | HOH2016 |
| E | HOH2019 |
| site_id | BC1 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE AGS E 1341 |
| Chain | Residue |
| E | HIS111 |
| E | MET112 |
| E | HIS115 |
| E | SER136 |
| E | GLY137 |
| E | GLY138 |
| E | HIS139 |
| E | GLY163 |
| E | PHE166 |
| E | ASP167 |
| E | GLY180 |
| E | PRO181 |
| E | GLY268 |
| E | VAL269 |
| E | ASN272 |
| E | THR299 |
| E | ASP300 |
| E | ZN1339 |
| E | HOH2006 |
| E | HOH2008 |
| E | HOH2014 |
| E | HOH2019 |
| E | HOH2098 |
| E | HOH2125 |
| E | HOH2162 |
| E | HOH2246 |
| E | HOH2247 |
| E | HOH2248 |
| site_id | BC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 1380 |
| Chain | Residue |
| B | HOH2139 |
| B | HOH2140 |
| B | HOH2141 |
| B | HOH2142 |
| B | HOH2265 |
| site_id | BC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG E 1380 |
| Chain | Residue |
| E | HOH2249 |
| A | HOH2170 |
| E | HOH2137 |
| E | HOH2138 |
Functional Information from PROSITE/UniProt
| site_id | PS01016 |
| Number of Residues | 21 |
| Details | GLYCOPROTEASE Glycoprotease family signature. RSlafaWNvPaIpvhHmeGHL |
| Chain | Residue | Details |
| B | ARG96-LEU116 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 14 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01445 |
| Chain | Residue | Details |
| B | HIS111 | |
| E | LEU134 | |
| E | ASP167 | |
| E | GLY180 | |
| E | ASN272 | |
| E | ASP300 | |
| B | HIS115 | |
| B | LEU134 | |
| B | ASP167 | |
| B | GLY180 | |
| B | ASN272 | |
| B | ASP300 | |
| E | HIS111 | |
| E | HIS115 |
