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3ZE6

3D structure of the Ni-Fe-Se hydrogenase from D. vulgaris Hildenborough in the as-isolated oxidized state at 1.50 Angstroms

Functional Information from GO Data
ChainGOidnamespacecontents
A0008901molecular_functionferredoxin hydrogenase activity
A0009375cellular_componentferredoxin hydrogenase complex
A0051536molecular_functioniron-sulfur cluster binding
B0005515molecular_functionprotein binding
B0008901molecular_functionferredoxin hydrogenase activity
B0016151molecular_functionnickel cation binding
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SF4 A 284
ChainResidue
AHIS208
ACYS211
ATYR213
ALEU214
ACYS232
AARG233
ACYS238
AVAL260

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SF4 A 285
ChainResidue
ACYS247
ATRP252
ACYS259
ACYS265
AILE266
ACYS268
BARG182
BGLN187
ATHR243

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SF4 A 286
ChainResidue
AGLY17
ACYS18
ACSS21
AGLU77
AGLY119
ATHR120
ACYS121
AGLY158
ACYS159
APRO160
BHIS185

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SBY A 1285
ChainResidue
ALEU26
AILE33
ALEU37
AHIS46
BGLU167

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SBY A 1286
ChainResidue
APRO8
AVAL170
ALEU174

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE FCO B 500
ChainResidue
BCYS78
BALA420
BPRO421
BARG422
BLEU425
BALA444
BSER445
BPSW489
BCYS492
BNI501

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI B 501
ChainResidue
BOCS75
BCYS78
BPSW489
BCYS492
BFCO500

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE2 B 502
ChainResidue
BGLU56
BILE441
BHIS495
BHOH2059
BHOH2060
BHOH2304

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 504
ChainResidue
BCYS78
BTHR80
BALA81
BPHE110
BASN113
BPRO421

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1498
ChainResidue
AASP103
AHOH2109
BSER230
BLYS231
BLYS233
BLEU352
BHOH2363

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SBY B 1499
ChainResidue
BGLN128
BVAL131
BPRO134
BPHE139
BTYR162
BSBY1500

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SBY B 1500
ChainResidue
BTYR162
BSBY1499

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SBY B 1501
ChainResidue
AASN111
AHOH2113
BPHE236
BILE355
BLEU363

Functional Information from PROSITE/UniProt
site_idPS00507
Number of Residues26
DetailsNI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGFEtilrgrdprdasqivQRiCGVC
ChainResidueDetails
BARG53-CYS78

site_idPS00508
Number of Residues10
DetailsNI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPULGCav.H
ChainResidueDetails
BPHE486-HIS495

222036

PDB entries from 2024-07-03

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