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3WYJ

Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-789

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004659molecular_functionprenyltransferase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008834molecular_functionditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016094biological_processpolyprenol biosynthetic process
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
A0036094molecular_functionsmall molecule binding
A0042803molecular_functionprotein homodimerization activity
A0043164biological_processGram-negative-bacterium-type cell wall biogenesis
A0045547molecular_functionditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity
B0000287molecular_functionmagnesium ion binding
B0004659molecular_functionprenyltransferase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008834molecular_functionditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016094biological_processpolyprenol biosynthetic process
B0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
B0036094molecular_functionsmall molecule binding
B0042803molecular_functionprotein homodimerization activity
B0043164biological_processGram-negative-bacterium-type cell wall biogenesis
B0045547molecular_functionditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE H78 A 900
ChainResidue
AMET25
AALA69
APHE70
ASER71
ALEU85
AMET86
ALEU88
APHE89
AHOH1005
AHOH1106
AHOH1151
AASP26
AHOH1155
AHOH1170
BALA237
BARG241
AGLY27
AASN28
AGLY29
AARG39
AALA40
AHIS43
AALA47

Functional Information from PROSITE/UniProt
site_idPS01066
Number of Residues18
DetailsUPP_SYNTHASE Undecaprenyl pyrophosphate synthase family signature. DLVIRTGGehRiSnFLLW
ChainResidueDetails
AASP190-TRP207

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15044730","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15044730","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Required for continued chain elongation"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Important for determining product length"}
ChainResidueDetails

251801

PDB entries from 2026-04-08

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