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3W88

Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-200

Functional Information from GO Data
ChainGOidnamespacecontents
A0004152molecular_functiondihydroorotate dehydrogenase activity
A0005737cellular_componentcytoplasm
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0006222biological_processUMP biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
A0044205biological_process'de novo' UMP biosynthetic process
A1990663molecular_functiondihydroorotate dehydrogenase (fumarate) activity
B0004152molecular_functiondihydroorotate dehydrogenase activity
B0005737cellular_componentcytoplasm
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0006222biological_processUMP biosynthetic process
B0016491molecular_functionoxidoreductase activity
B0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
B0044205biological_process'de novo' UMP biosynthetic process
B1990663molecular_functiondihydroorotate dehydrogenase (fumarate) activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE W88 A 401
ChainResidue
ALYS43
AASN194
ASER195
ALYS214
AGOL405
AFMN417
AHOH824
AASN53
AASN67
AMET69
AGLY70
ALEU71
AASN127
ACYS130
APRO131

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 402
ChainResidue
ACYS31
AALA34
ASER35
AHOH528
BCYS31
BALA34
BSER35
BHOH631

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 403
ChainResidue
AILE171
AARG238
AARG239
AEDO429
AHOH584
BLYS214
BPHE217

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 404
ChainResidue
ALYS214
APHE217
AGOL407
AHOH545
AHOH683
AHOH846
BILE171
BARG239

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 405
ChainResidue
APRO166
AASN194
ASER195
AGLY197
AGLY219
AW88401
AHOH519
AHOH526
AHOH824

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 406
ChainResidue
APHE61
AASP203
AEDO434
AHOH567
AHOH628
AHOH801

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 407
ChainResidue
AGLN215
AGOL404
AHOH682
AHOH691
AHOH771
AHOH772
AHOH830
AHOH847
BARG238
BHOH659

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 408
ChainResidue
AGLU277
AARG284
AHOH635
AHOH806
BGLU27
BHOH582

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 409
ChainResidue
AGLN275
ACAC415
AHOH536
AHOH604
AHOH671
AHOH848

site_idBC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 410
ChainResidue
AVAL10
ATYR89
ASER90
ALYS91
APRO93
AEDO423
AHOH543
AHOH562
AHOH623
AHOH650

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 411
ChainResidue
APRO241
ALYS243
AGOL413
AHOH722
AHOH799
BASP8

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 412
ChainResidue
APRO241
AASP242
AEDO435
AHOH520
AHOH629
AHOH832
BGLU105
BHOH688

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 413
ChainResidue
ATYR237
APRO241
AGOL411
AHOH720

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 414
ChainResidue
AASP51
AGLY52
AASN53
APRO54
AARG57
AHOH597
AHOH739
AHOH854

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CAC A 415
ChainResidue
AASP28
AGOL409
AHOH544
AHOH590
AHOH782
AHOH784

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CAC A 416
ChainResidue
ALYS296
ATYR298
AEDO427
BHOH815
BHOH827
BHOH889

site_idBC8
Number of Residues23
DetailsBINDING SITE FOR RESIDUE FMN A 417
ChainResidue
AALA18
AALA19
AGLY20
ALYS43
ASER44
AASN67
AASN127
ALYS164
AVAL193
AASN194
AGLY221
AGLY222
AILE225
ACYS248
AGLY249
AGLY250
AGLY271
ATHR272
AW88401
AHOH508
AHOH515
AHOH524
AHOH798

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 418
ChainResidue
AARG238
AGLY306
AVAL308
AHOH576
AHOH811

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 419
ChainResidue
AGLU119
AHOH791

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 420
ChainResidue
AARG50
AASP51
AHOH534
AHOH611

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 421
ChainResidue
APHE61
APRO62
AGLU276
AHOH636

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 422
ChainResidue
AARG299
AGLU303
AHOH836
BSER90

site_idCC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 423
ChainResidue
AALA12
ASER36
ASER37
ALYS91
AGOL410
AHOH543
AHOH789

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 424
ChainResidue
AGLU255
AARG295
ALYS296
BGLU205

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 425
ChainResidue
ALEU63
ALYS223
AHOH633
BEDO430
BHOH862
BHOH897

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 426
ChainResidue
AGLU302
AGLU303
AARG307
AHOH868
BSER90
BGOL407
BHOH914

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 427
ChainResidue
ATYR298
ACAC416
AHOH665
AHOH868

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 428
ChainResidue
ASER47
AASP77
AHOH516
AHOH850
BHOH932

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 429
ChainResidue
AGOL403
BARG111
BW88401
BHOH576
BHOH930

site_idDC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 430
ChainResidue
ACYS130
APRO131
AVAL133
ALYS136
APRO137
AEDO431
AHOH688

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 431
ChainResidue
ALEU101
ASER102
AVAL103
ATYR149
AEDO430

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 432
ChainResidue
ASER84
AASP85
AHIS87
ALYS120
AHOH579

site_idDC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 433
ChainResidue
AASN5
ALEU6
ALEU7
AASP8
BASN5

site_idDC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 434
ChainResidue
AMET59
APHE61
AASP203
AVAL210
AGOL406
ANCO442
AHOH565
AHOH734

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 435
ChainResidue
AASN182
APRO185
AASP242
AGOL412
AHOH657
BGOL409

site_idDC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG A 436
ChainResidue
ATYR141
ATYR168
APHE169
AHIS173
AHOH775
BTYR168
BPHE169
BHIS173
BHOH808

site_idEC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 437
ChainResidue
ACYS1
ALEU2
ALYS3
AALA12
AGLU286
AHOH653
BSER-1

site_idEC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG A 438
ChainResidue
AGLN151
ASER154
ALEU155
AGLY158
ALEU186
APEG440
AHOH759
AHOH813
AHOH870

site_idEC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG A 439
ChainResidue
AARG147
AGLN151
AGLU183
APHE184
APRO185
APEG440
AHOH870
BGOL409

site_idEC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 440
ChainResidue
APRO185
ALEU186
APEG438
APEG439
AHOH505

site_idEC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE NCO A 441
ChainResidue
AGLN275
AGLU276
AGLY278
AHOH626
AHOH655
AHOH667
AHOH706
BGLN275
BGLU276
BGLY278

site_idEC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NCO A 442
ChainResidue
AASP203
AGLU205
AEDO434
AHOH734
AHOH863
BASP203
BGLU205
BGOL410

site_idEC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE W88 B 401
ChainResidue
AEDO429
BLYS43
BARG50
BASN67
BMET69
BGLY70
BLEU71
BLEU101
BASN127
BPRO131
BASN194
BSER195
BGOL402
BFMN415
BEDO429
BPEG433
BHOH930
BHOH937
BHOH938

site_idEC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 402
ChainResidue
BSER129
BGLN138
BASN194
BSER195
BGLY197
BW88401
BHOH514
BHOH676
BHOH834
BHOH903

site_idEC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 403
ChainResidue
BPHE61
BASP203
BPEG431
BHOH598
BHOH647
BHOH648
BHOH742

site_idFC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 404
ChainResidue
BTYR58
BGLN275
BCAC413
BHOH559
BHOH570
BHOH621
BHOH831
BHOH872
BHOH912

site_idFC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 405
ChainResidue
AASN5
BLEU4
BASN5
BGLU302
BARG305
BGOL406
BHOH619
BHOH776
BHOH778
BHOH931

site_idFC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 406
ChainResidue
AASP8
BPRO241
BASP242
BLYS243
BLEU244
BGOL405
BGOL408
BCAC414
BHOH556
BHOH778
BHOH845

site_idFC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 407
ChainResidue
ATHR300
AGLU302
AGLU303
AEDO426
BVAL10
BTYR89
BSER90
BPRO93
BHOH591
BHOH658
BHOH666

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 408
ChainResidue
BTYR237
BARG238
BPRO241
BGOL406
BCAC414

site_idFC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 409
ChainResidue
AGLU183
AEDO435
APEG439
AHOH810
BHOH691
BHOH693
BHOH694
BHOH696
BHOH913

site_idFC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 410
ChainResidue
AILE311
ANCO442
BASP203
BSER206
BSER208
BVAL209
BHOH612
BHOH647

site_idFC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 411
ChainResidue
AARG112
BASP175
BHOH725
BHOH730

site_idFC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 412
ChainResidue
BPRO62
BLYS223
BEDO418
BEDO430
BHOH628
BHOH629
BHOH756

site_idGC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CAC B 413
ChainResidue
AHOH785
BASP28
BGOL404
BHOH542
BHOH593
BHOH754

site_idGC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CAC B 414
ChainResidue
BPRO241
BGOL406
BGOL408
BHOH907

site_idGC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE FMN B 415
ChainResidue
BALA18
BALA19
BGLY20
BLYS43
BSER44
BASN67
BASN127
BLYS164
BVAL193
BASN194
BGLY221
BGLY222
BILE225
BCYS248
BGLY249
BGLY250
BGLY271
BTHR272
BW88401
BHOH505
BHOH516
BHOH522
BHOH675

site_idGC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 416
ChainResidue
AGLU183
BSER47
BGLY75
BPHE76
BASP77
BHOH539
BHOH586
BHOH694

site_idGC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 417
ChainResidue
AHOH708
BPHE61
BPRO62
BGLU276
BPEG431
BHOH629
BHOH756
BHOH868

site_idGC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO B 418
ChainResidue
BTYR252
BALA273
BGLU276
BGLU277
BARG284
BGOL412
BHOH628
BHOH629
BHOH757

site_idGC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 419
ChainResidue
ALEU63
BLYS223
BHOH627
BHOH863
BHOH897
BHOH940

site_idGC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 420
ChainResidue
BGLU55
BHOH669
BHOH829

site_idGC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 421
ChainResidue
BSER84
BASP85
BHIS87
BLYS120
BHOH564
BHOH584

site_idHC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 422
ChainResidue
BPRO54
BLYS212
BPRO213
BHOH527
BHOH655
BHOH745

site_idHC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 423
ChainResidue
BALA117
BGLN118
BGLU119
BLYS120
BGLY121
BHOH859

site_idHC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 424
ChainResidue
AARG299
BALA12
BSER35
BSER36
BSER37
BLYS91
BHOH512
BHOH634

site_idHC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 425
ChainResidue
BLEU7
BASP8
BPRO160
BHOH592
BHOH909
BHOH929

site_idHC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 426
ChainResidue
AGLU205
BARG295
BLYS296
BHOH925

site_idHC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 427
ChainResidue
BLEU2
BGLU286
BEDO428
BHOH657

site_idHC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 428
ChainResidue
AMET0
BMET0
BEDO427
BHOH819

site_idHC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 429
ChainResidue
BARG50
BGLY52
BASN53
BW88401
BHOH555
BHOH875

site_idHC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 430
ChainResidue
AEDO425
BPRO62
BGOL412
BHOH897
BHOH940

site_idIC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG B 431
ChainResidue
BPHE61
BPRO62
BGOL403
BEDO417
BHOH868

site_idIC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PEG B 432
ChainResidue
AASP175
AARG239
AHOH589
AHOH720
AHOH753
AHOH832
BGLU104
BALA108
BARG111
BHOH802

site_idIC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG B 433
ChainResidue
BASN53
BSER68
BMET69
BGLY70
BLYS214
BW88401
BHOH527
BHOH930
BHOH938

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000250
ChainResidueDetails
ACYS130
BCYS130

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:18302934
ChainResidueDetails
AVAL193
AGLY222
AGLY249
AGLY271
BALA19
BLYS164
BVAL193
BGLY222
BGLY249
BGLY271
AALA19
ALYS164

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING:
ChainResidueDetails
AASN194
BLYS43
BASN67
BASN127
BASN132
BASN194
ALYS43
AASN67
AASN127
AASN132

219869

PDB entries from 2024-05-15

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