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3VTH

Crystal structure of full-length HypF in the phosphate- and nucleotide-bound form

Functional Information from GO Data
ChainGOidnamespacecontents
A0003725molecular_functiondouble-stranded RNA binding
A0003998molecular_functionacylphosphatase activity
A0008270molecular_functionzinc ion binding
A0016743molecular_functioncarboxyl- or carbamoyltransferase activity
A0016787molecular_functionhydrolase activity
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0046944biological_processprotein carbamoylation
A0051604biological_processprotein maturation
B0003725molecular_functiondouble-stranded RNA binding
B0003998molecular_functionacylphosphatase activity
B0008270molecular_functionzinc ion binding
B0016743molecular_functioncarboxyl- or carbamoyltransferase activity
B0016787molecular_functionhydrolase activity
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0046944biological_processprotein carbamoylation
B0051604biological_processprotein maturation
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 801
ChainResidue
ACYS114
ACYS117
ACYS136
ACYS139

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 802
ChainResidue
ACYS164
ACYS167
ACYS186
ACYS189

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 A 803
ChainResidue
AVAL23
AGLY24
APHE25
AARG26
APRO27
AASN44
ATYR151
AHOH956
AHOH989
AHOH1001
AGLY22

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE APC A 804
ChainResidue
ALYS245
AARG247
ALYS250
APRO251
ALEU285
ATHR303
AGLY305
ATHR328
ASER329
AASN331
AGLU334
AVAL370
AARG382
AMG805
AHOH913
AHOH928
AHOH940
AHOH962
AHOH1008
AHOH1072
AHOH1129
AHOH1144
AHOH1186
AHOH1222
AHOH1297

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 805
ChainResidue
ASER329
AAPC804
AHOH1297

site_idAC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE AP2 A 806
ChainResidue
ATYR409
AHIS483
AHIS487
AASP507
AGLY508
ATHR509
AGLY598
AARG599
APHE601
AGLU617
AALA621
AGLU625
AGLY702
ASER703
AGLN705
AASN706
AASN733
AASP734
AFE807
AHOH957
AHOH1152
AHOH1194
AHOH1224

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE A 807
ChainResidue
AHIS483
AHIS487
AASP507
AASP734
AAP2806

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 808
ChainResidue
ALYS528
AGLY751
ASER752
BARG587

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 809
ChainResidue
AARG83
ASER631
AGLU632
AGLU633
AHOH1103

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 810
ChainResidue
AARG280
AGOL812
AHOH1135
AHOH1138
AHOH1235

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 811
ChainResidue
AHIS462
AGLU545
AHOH987
BLYS463
BLYS472

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 812
ChainResidue
AHOH1233
AHOH1234
AARG280
AARG383
ATYR387
APO4810
AHOH1138

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 813
ChainResidue
ALYS588
AHOH1058
AHOH1285
AHOH1295
BMET461
BGLN482
BHIS485
BHOH927

site_idBC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 801
ChainResidue
AMET461
AGLU480
AVAL481
AGLN482
AHIS485
AHOH935
AHOH1275
BLYS588
BHOH908
BHOH998

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 802
ChainResidue
BCYS114
BCYS117
BCYS136
BCYS139

site_idBC7
Number of Residues18
DetailsBINDING SITE FOR RESIDUE APC B 804
ChainResidue
BLYS245
BARG247
BLYS250
BPRO251
BLEU285
BTHR303
BLEU304
BGLY305
BTHR328
BSER329
BASN331
BSER333
BGLU334
BVAL370
BARG382
BMET622
BMG805
BHOH992

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 805
ChainResidue
BSER329
BASP367
BARG382
BAPC804

site_idBC9
Number of Residues20
DetailsBINDING SITE FOR RESIDUE AP2 B 806
ChainResidue
BTYR409
BHIS483
BHIS487
BASP507
BGLY508
BTHR509
BGLY598
BPHE601
BGLU617
BALA621
BGLU625
BGLY702
BSER703
BGLN705
BASN706
BASN733
BASP734
BFE807
BHOH903
BHOH993

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE B 807
ChainResidue
BHIS483
BHIS487
BASP507
BASP734
BAP2806

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 B 808
ChainResidue
AARG587
BARG243
BLYS528
BGLY751
BSER752

Functional Information from PROSITE/UniProt
site_idPS00150
Number of Residues11
DetailsACYLPHOSPHATASE_1 Acylphosphatase signature 1. IfGiVQGVgFR
ChainResidueDetails
AILE16-ARG26

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PDB entries from 2024-06-12

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