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3VKG

X-ray structure of an MTBD truncation mutant of dynein motor domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0007018biological_processmicrotubule-based movement
A0008569molecular_functionminus-end-directed microtubule motor activity
A0016887molecular_functionATP hydrolysis activity
A0030286cellular_componentdynein complex
A0045505molecular_functiondynein intermediate chain binding
A0051959molecular_functiondynein light intermediate chain binding
B0005524molecular_functionATP binding
B0007018biological_processmicrotubule-based movement
B0008569molecular_functionminus-end-directed microtubule motor activity
B0016887molecular_functionATP hydrolysis activity
B0030286cellular_componentdynein complex
B0045505molecular_functiondynein intermediate chain binding
B0051959molecular_functiondynein light intermediate chain binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ADP A 9001
ChainResidue
ALEU1947
AILE2108
ALEU2149
AARG2150
ALYS2153
AVAL1948
ATHR1953
AGLY1977
ATHR1978
AGLY1979
ALYS1980
ATHR1981
AGLU1982

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ADP A 9002
ChainResidue
AMG1
ALEU2249
AVAL2250
ATRP2255
AGLY2279
AGLY2280
AGLY2281
ALYS2282
ATHR2283
ATHR2284
AGLU2396
ALEU2421
AMET2425
AASN2429
AARG2806
AARG2809

site_idAC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ADP A 9003
ChainResidue
AVAL2646
AVAL2647
AILE2648
ATHR2653
AGLY2677
ASER2678
AGLY2679
ALYS2680
ATHR2681
AMET2682
AILE2827
APRO2876
AARG2877
ASER2880

site_idAC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ADP A 9004
ChainResidue
APRO2987
ALEU2988
AVAL2989
APHE2991
AVAL2994
AGLY3019
AGLY3020
AGLY3021
ALYS3022
ASER3023
AVAL3024
ATRP3176

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SPM A 9012
ChainResidue
APHE2439
AGLU2666
AHIS2667

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SPM A 9016
ChainResidue
APHE4089
AHIS4090
ASER4091
ASER4420

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1
ChainResidue
ATHR2283
AGLU2396
AARG2806
AADP9002

site_idAC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ADP B 9007
ChainResidue
BMG2
BLEU1947
BVAL1948
BTHR1953
BALA1976
BGLY1977
BTHR1978
BGLY1979
BLYS1980
BTHR1981
BGLU1982
BILE2108
BLEU2149
BARG2150
BLYS2153

site_idAC9
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ADP B 9008
ChainResidue
BMG3
BVAL2250
BTRP2255
BGLY2279
BGLY2280
BGLY2281
BLYS2282
BTHR2283
BTHR2284
BGLU2396
BLEU2421
BMET2425
BARG2809

site_idBC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ADP B 9009
ChainResidue
BSER2678
BGLY2679
BLYS2680
BTHR2681
BMET2682
BILE2827
BTYR2828
BPRO2876
BARG2877
BSER2880
BVAL2646
BVAL2647
BILE2648
BPRO2676
BGLY2677

site_idBC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ADP B 9010
ChainResidue
BPRO2987
BLEU2988
BVAL2989
BPHE2991
BVAL2994
BSER3018
BGLY3019
BGLY3020
BGLY3021
BLYS3022
BSER3023
BVAL3024
BTRP3176
BARG3258
BLEU3261

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SPM B 9018
ChainResidue
BTYR2430
BLEU2434
BGLU2437
BPRO2438
BPHE2439
BASN2542
BARG2668

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SPM B 9022
ChainResidue
BLYS4087
BALA4088
BPHE4089
BHIS4090
BSER4091
BSER4416
BSER4420

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 2
ChainResidue
BTHR1981
BASP2026
BADP9007

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 3
ChainResidue
BTHR2283
BGLU2396
BGLU2768
BADP9008

Functional Information from PROSITE/UniProt
site_idPS00639
Number of Residues11
DetailsTHIOL_PROTEASE_HIS Eukaryotic thiol (cysteine) proteases histidine active site. INHGVMMVGPS
ChainResidueDetails
AILE2268-SER2278

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY1974
AGLY2276
AGLY2674
AGLY3016
BGLY1974
BGLY2276
BGLY2674
BGLY3016

222415

PDB entries from 2024-07-10

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