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3VED

Rhodococcus jostii RHA1 DypB D153H variant in complex with heme

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0005829cellular_componentcytosol
A0020037molecular_functionheme binding
A0046872molecular_functionmetal ion binding
A0098869biological_processcellular oxidant detoxification
B0004601molecular_functionperoxidase activity
B0005829cellular_componentcytosol
B0020037molecular_functionheme binding
B0046872molecular_functionmetal ion binding
B0098869biological_processcellular oxidant detoxification
C0004601molecular_functionperoxidase activity
C0005829cellular_componentcytosol
C0020037molecular_functionheme binding
C0046872molecular_functionmetal ion binding
C0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE HEM A 401
ChainResidue
AASP147
AHIS189
AILE206
AARG208
AHIS226
AVAL227
AASN230
AARG244
APHE261
AMET274
ALEU275
APHE151
AMET278
ASER294
ACL404
AHOH527
AHOH533
AHOH535
AHOH552
AVAL152
AHIS153
AGLY154
ATHR155
AGLU156
AGLN185
ATYR187

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 402
ChainResidue
ALYS113
APHE117
AHIS138

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 403
ChainResidue
AALA111
AARG112
ALYS113
AHOH530
AHOH537
AHOH597
AHOH620
BARG112
BLYS113

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 404
ChainResidue
AHIS153
AARG244
AASN246
AHEM401

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEM B 401
ChainResidue
BVAL152
BHIS153
BGLY154
BTHR155
BGLU156
BGLN185
BTYR187
BHIS189
BARG208
BHIS226
BVAL227
BASN230
BARG244
BPHE261
BLEU275
BMET278
BSER294
BCL403
BHOH571
BHOH572
BHOH580

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 402
ChainResidue
BLYS113
BHIS138

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 403
ChainResidue
BHIS153
BARG244
BASN246
BHEM401

site_idAC8
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEM C 401
ChainResidue
CASP147
CPHE151
CVAL152
CHIS153
CGLY154
CTHR155
CGLU156
CGLN185
CTYR187
CHIS189
CARG208
CHIS226
CVAL227
CASN230
CARG244
CPHE261
CMET274
CLEU275
CMET278
CVAL290
CSER294
CCL403
CHOH528
CHOH543

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL C 402
ChainResidue
CLYS113
CPHE117
CHIS138

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL C 403
ChainResidue
CHEM401
CHIS153
CARG244
CASN246

219869

PDB entries from 2024-05-15

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