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3V1R

Crystal structures of the reverse transcriptase-associated ribonuclease H domain of XMRV with inhibitor beta-thujaplicinol

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1
ChainResidue
ASER584
AARG585
ATYR586
ALYS640

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 2
ChainResidue
AARG534
AARG534

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 3
ChainResidue
AARG650
APHE528
ALEU529
AARG534

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 4
ChainResidue
ATYR522
AARG601
AALA644

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MRD A 672
ChainResidue
AARG560
AARG560
AARG609
AARG609
ALYS612
AASN613
ALYS614

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN A 673
ChainResidue
AASP524
AGLU562
AASP583
AJTH675

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 674
ChainResidue
AASP524
AHIS638
AASP653
AARG657
AJTH675

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE JTH A 675
ChainResidue
AASP524
AGLU562
AASP583
AHIS638
AHIS638
AASP653
AARG657
AMN673
AMN674

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues146
DetailsDomain: {"description":"RNase H type-1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00408","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00408","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"22366278","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"A1Z651","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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