3UYJ
Crystal structure of JMJD5 catalytic core domain in complex with nickle and alpha-KG
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NI A 501 |
| Chain | Residue |
| A | HOH5 |
| A | HIS321 |
| A | ASP323 |
| A | HIS400 |
| A | AKG601 |
| site_id | AC2 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE AKG A 601 |
| Chain | Residue |
| A | SER318 |
| A | HIS321 |
| A | ASP323 |
| A | ASN327 |
| A | LYS336 |
| A | HIS400 |
| A | VAL402 |
| A | SER412 |
| A | TRP414 |
| A | NI501 |
| A | HOH58 |
| A | HOH119 |
| A | TYR272 |
| A | TRP310 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NI B 501 |
| Chain | Residue |
| B | HOH19 |
| B | HIS321 |
| B | ASP323 |
| B | HIS400 |
| B | AKG601 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE AKG B 601 |
| Chain | Residue |
| B | TYR272 |
| B | TRP310 |
| B | SER318 |
| B | HIS321 |
| B | ASP323 |
| B | ASN327 |
| B | LYS336 |
| B | HIS400 |
| B | VAL402 |
| B | SER412 |
| B | TRP414 |
| B | NI501 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:29459673 |
| Chain | Residue | Details |
| A | GLU238 | |
| A | GLN275 | |
| A | SER318 | |
| B | GLU238 | |
| B | GLN275 | |
| B | SER318 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:22851697, ECO:0000269|PubMed:29459673, ECO:0000269|PubMed:29563586, ECO:0000305|PubMed:24100311, ECO:0007744|PDB:3UYJ, ECO:0007744|PDB:4GJZ, ECO:0007744|PDB:4QU1, ECO:0007744|PDB:5FBJ |
| Chain | Residue | Details |
| A | TYR272 | |
| A | ASN327 | |
| A | LYS336 | |
| B | TYR272 | |
| B | ASN327 | |
| B | LYS336 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:22851697, ECO:0000305|PubMed:24100311, ECO:0007744|PDB:4GJY, ECO:0007744|PDB:4GJZ |
| Chain | Residue | Details |
| A | HIS321 | |
| A | ASP323 | |
| A | HIS400 | |
| B | HIS321 | |
| B | ASP323 | |
| B | HIS400 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:22851697, ECO:0000269|PubMed:29459673, ECO:0000269|PubMed:29563586, ECO:0007744|PDB:3UYJ, ECO:0007744|PDB:4GJZ |
| Chain | Residue | Details |
| A | TRP414 | |
| B | TRP414 |
