Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3U7X

Crystal structure of the human eIF4E-4EBP1 peptide complex without cap

Replaces: 3SMU

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000082	biological_process	G1/S transition of mitotic cell cycle
A	0000339	molecular_function	RNA cap binding
A	0000340	molecular_function	RNA 7-methylguanosine cap binding
A	0000932	cellular_component	P-body
A	0001662	biological_process	behavioral fear response
A	0003723	molecular_function	RNA binding
A	0003743	molecular_function	translation initiation factor activity
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006406	biological_process	mRNA export from nucleus
A	0006412	biological_process	translation
A	0006413	biological_process	translational initiation
A	0006417	biological_process	regulation of translation
A	0010494	cellular_component	cytoplasmic stress granule
A	0010507	biological_process	negative regulation of autophagy
A	0016281	cellular_component	eukaryotic translation initiation factor 4F complex
A	0016442	cellular_component	RISC complex
A	0016604	cellular_component	nuclear body
A	0016607	cellular_component	nuclear speck
A	0017148	biological_process	negative regulation of translation
A	0019827	biological_process	stem cell population maintenance
A	0019899	molecular_function	enzyme binding
A	0030182	biological_process	neuron differentiation
A	0031370	molecular_function	eukaryotic initiation factor 4G binding
A	0033391	cellular_component	chromatoid body
A	0036464	cellular_component	cytoplasmic ribonucleoprotein granule
A	0045665	biological_process	negative regulation of neuron differentiation
A	0045931	biological_process	positive regulation of mitotic cell cycle
A	0048471	cellular_component	perinuclear region of cytoplasm
A	0051028	biological_process	mRNA transport
A	0051168	biological_process	nuclear export
A	0070062	cellular_component	extracellular exosome
A	0071549	biological_process	cellular response to dexamethasone stimulus
A	0098794	cellular_component	postsynapse
A	0098808	molecular_function	mRNA cap binding
A	0098978	cellular_component	glutamatergic synapse
A	0099578	biological_process	regulation of translation at postsynapse, modulating synaptic transmission
A	0140297	molecular_function	DNA-binding transcription factor binding
B	0000082	biological_process	G1/S transition of mitotic cell cycle
B	0000339	molecular_function	RNA cap binding
B	0000340	molecular_function	RNA 7-methylguanosine cap binding
B	0000932	cellular_component	P-body
B	0001662	biological_process	behavioral fear response
B	0003723	molecular_function	RNA binding
B	0003743	molecular_function	translation initiation factor activity
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0006406	biological_process	mRNA export from nucleus
B	0006412	biological_process	translation
B	0006413	biological_process	translational initiation
B	0006417	biological_process	regulation of translation
B	0010494	cellular_component	cytoplasmic stress granule
B	0010507	biological_process	negative regulation of autophagy
B	0016281	cellular_component	eukaryotic translation initiation factor 4F complex
B	0016442	cellular_component	RISC complex
B	0016604	cellular_component	nuclear body
B	0016607	cellular_component	nuclear speck
B	0017148	biological_process	negative regulation of translation
B	0019827	biological_process	stem cell population maintenance
B	0019899	molecular_function	enzyme binding
B	0030182	biological_process	neuron differentiation
B	0031370	molecular_function	eukaryotic initiation factor 4G binding
B	0033391	cellular_component	chromatoid body
B	0036464	cellular_component	cytoplasmic ribonucleoprotein granule
B	0045665	biological_process	negative regulation of neuron differentiation
B	0045931	biological_process	positive regulation of mitotic cell cycle
B	0048471	cellular_component	perinuclear region of cytoplasm
B	0051028	biological_process	mRNA transport
B	0051168	biological_process	nuclear export
B	0070062	cellular_component	extracellular exosome
B	0071549	biological_process	cellular response to dexamethasone stimulus
B	0098794	cellular_component	postsynapse
B	0098808	molecular_function	mRNA cap binding
B	0098978	cellular_component	glutamatergic synapse
B	0099578	biological_process	regulation of translation at postsynapse, modulating synaptic transmission
B	0140297	molecular_function	DNA-binding transcription factor binding
C	0008190	molecular_function	eukaryotic initiation factor 4E binding
C	0045947	biological_process	negative regulation of translational initiation
D	0008190	molecular_function	eukaryotic initiation factor 4E binding
D	0045947	biological_process	negative regulation of translational initiation

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 218

Chain	Residue
A	GLU171
A	ARG173
A	GLU174
A	HOH249

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 B 218

Chain	Residue
B	ARG42
B	LYS65

site_id	AC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 B 219

Chain	Residue
B	ARG157
B	LYS162

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 B 220

Chain	Residue
B	ARG173
B	GLU174
B	GLU171

Functional Information from PROSITE/UniProt

site_id	PS00813
Number of Residues	24
Details	IF4E Eukaryotic initiation factor 4E signature. DYslFKdgIePmWEDeknkrGGRW

Chain	Residue	Details
A	ASP90-TRP113

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	28
Details	Region: {"description":"EIF4EBP1/2/3 binding","evidences":[{"source":"PubMed","id":"16271312","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	18
Details	Binding site: {"evidences":[{"source":"PubMed","id":"11879179","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12975586","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16271312","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	2
Details	Site: {"description":"(Microbial infection) Interaction with potato virus Y VPg","evidences":[{"source":"PubMed","id":"31712417","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine; by PKC and MKNK2","evidences":[{"source":"PubMed","id":"11154262","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25923732","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7665584","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"7782323","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	12
Details	Motif: {"description":"YXXXXLphi motif","evidences":[{"source":"UniProtKB","id":"P70445","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	2
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18220336","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	2
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22578813","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)