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3TVX

The structure of PDE4A with pentoxifylline at 2.84A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 900
ChainResidue
AHIS376
AHIS412
AASP413
AASP530

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 901
ChainResidue
AHIS412
AASP413
ATHR483

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PNX A 902
ChainResidue
AMET569
AGLN581
APHE584
ATYR371
AASN533

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 900
ChainResidue
BHIS376
BHIS412
BASP413
BASP530
BMG901

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG B 901
ChainResidue
BASP413
BZN900

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PNX B 902
ChainResidue
BTYR371
BASN533
BILE548
BMET569
BGLN581
BPHE584

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 903
ChainResidue
BASP513
BASN514
BTYR515
BARG518

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 904
ChainResidue
BARG467
BARG560
BLYS572
BHIS573

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS412-PHE423

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS372
BHIS372

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS372
AASP413
AGLN581
APHE584
BHIS372
BASP413
BGLN581
BPHE584

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:17727341, ECO:0000269|Ref.20, ECO:0007744|PDB:2QYK, ECO:0007744|PDB:3I8V
ChainResidueDetails
AHIS376
AHIS412
AASP530
BHIS376
BHIS412
BASP530

site_idSWS_FT_FI4
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000269|PubMed:20196770
ChainResidueDetails
ALYS297
BLYS297

224201

PDB entries from 2024-08-28

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