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3TV1

Crystal structure of RtcA.AMP product complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0003963molecular_functionRNA-3'-phosphate cyclase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006396biological_processRNA processing
A0016874molecular_functionligase activity
B0003824molecular_functioncatalytic activity
B0003963molecular_functionRNA-3'-phosphate cyclase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006396biological_processRNA processing
B0016874molecular_functionligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AMP A 401
ChainResidue
AARG21
AASN309
AHOH428
AHOH509
AHOH538
AHOH565
AHOH566
AGLN104
ASER129
AALA130
APRO131
APHE251
ATYR284
AASP287
AGLN288

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AMP B 401
ChainResidue
BARG21
BGLN104
BSER129
BALA130
BPRO131
BPHE135
BPHE251
BTYR284
BASP287
BGLN288
BASN309
BHOH359
BHOH389
BHOH477
BHOH624

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 801
ChainResidue
BHIS158
BLEU197
BHIS225
BHOH461
BHOH537
BHOH866
BHOH890

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 802
ChainResidue
AHIS158
ALEU197
AHIS225
AHOH502
AHOH526
AHOH541
AHOH827
AHOH828

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 803
ChainResidue
AGLU14
AARG43
AHOH657
AHOH805
AHOH862
AHOH878

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 804
ChainResidue
BGLU14
BARG43
BHOH575
BHOH614
BHOH823
BHOH865

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 851
ChainResidue
BTHR125
BASP126
BALA133
BHOH728
BPEG991

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 901
ChainResidue
AARG137
AARG138
AARG193

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 951
ChainResidue
AGLU207
AILE210
AALA211
AHOH678
AHOH872

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG B 991
ChainResidue
BASP126
BPRO132
BALA133
BASP134
BLEU155
BHOH666
BCL851
BHOH890

Functional Information from PROSITE/UniProt
site_idPS01287
Number of Residues11
DetailsRTC RNA 3'-terminal phosphate cyclase signature. HGfyPaGGGvV
ChainResidueDetails
AHIS158-VAL168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Tele-AMP-histidine intermediate => ECO:0000269|PubMed:20399182, ECO:0007744|PDB:1QMH
ChainResidueDetails
AASN309
BASN309

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:20399182, ECO:0007744|PDB:3KGD
ChainResidueDetails
AGLN104
BASP287
BGLN288
BASN309
APRO131
ATYR284
AASP287
AGLN288
AASN309
BGLN104
BPRO131
BTYR284

Catalytic Information from CSA
site_idMCSA1
Number of Residues2
DetailsM-CSA 882
ChainResidueDetails
AGLU14modifies pKa
AASN309covalent catalysis

site_idMCSA2
Number of Residues2
DetailsM-CSA 882
ChainResidueDetails
BGLU14modifies pKa
BASN309covalent catalysis

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PDB entries from 2024-07-10

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